Detail information of Os11g0572100_circ_g.8


General Information
CircRNA Name Os11g0572100_circ_g.8
ID in PlantcircBase osa_circ_009651
Alias NA
Organism Oryza sativa
Position chr11: 21449559-21449666  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os11g0572100
Parent gene annotation Similar to DNA ligase (EC 6.5.1.2). (Os11t0572100-01);Similar to
DNA ligase (EC 6.5.1.2). (Os11t0572100-02);Similar to Replicati
on factor C 110 kDa subunit. (Os11t0572100-03);Similar to Replic
ation factor C 110 kDa subunit. (Os11t0572100-04)
Parent gene strand +
Alternative splicing Os11g0572100_circ_g.3 Os11g0572100_circ_g.4 Os11g0572100_circ_g.5 Os11g0572100_circ_g.6 Os11g0572100_circ_g.7
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGTTTTTACTCTTCACACGTATGATGCATCGTGTATCAGGTTGTAAAGCAAGgtggatatac
ttttacatattctacaaatttatcctttctggcattccatggat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGATATACTTTTACATATTCTACAAATTTATCCTTTCTGGCATTCCATGGATTCTGTTTTTA
CTCTTCACACGTATGATGCATCGTGTATCAGGTTGTAAAGCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.14969213
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017