Detail information of Os11g0572100_circ_g.3


General Information
CircRNA Name Os11g0572100_circ_g.3
ID in PlantcircBase osa_circ_009646
Alias NA
Organism Oryza sativa
Position chr11: 21444972-21451757  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0572100
Parent gene annotation Similar to DNA ligase (EC 6.5.1.2). (Os11t0572100-01);Similar to
DNA ligase (EC 6.5.1.2). (Os11t0572100-02);Similar to Replicati
on factor C 110 kDa subunit. (Os11t0572100-03);Similar to Replic
ation factor C 110 kDa subunit. (Os11t0572100-04)
Parent gene strand +
Alternative splicing Os11g0572100_circ_g.4 Os11g0572100_circ_g.5 Os11g0572100_circ_g.6 Os11g0572100_circ_g.7 Os11g0572100_circ_g.8
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0572100-03:17
Os11t0572100-01:17
Os11t0572100-04:6
Os11t0572100-02:17
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAGCAATCCTTGAGCCAGTGGGAGAGAGTTTGCCTGAAGAAAATGGAGTAGCGTCATCTGAAG
GCGATGAAGAGGATTCCTCTGATGCTGAAAATAATGgaagtcccggagggtgcccctgactgtt
taactggtttgacatttgtcataagtggcactcttgacaggtgctttctattgtcttcatttct
tcatattt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.118210565
Functional Information
Coding potential Y
Potential coding position 21445516-21444991(+)
21451726-21444991(+)
21445016-21451539(-)
21445023-21451714(-)
Potential amino acid sequence MIRKSKPAKATVAKHQSDKNSEKQQKSPMKSSPVKVERRDGNQITTGKNISPKSNKGSASIDNQ
KVNIVDRGSLQWTEKYRPKVPNDIVGNQSMVKQLHDWLRSWEDQFLHSGQKGKGKKQADSGAKK
AVLLSGPPGIGKTTTAKVVSQMLGLQAIEVNASDSRGKADSKIEKGVGGSTSNSIKELISNATL
NYSNNRLKRPKAVLVMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCL
LLNFRKPTKQQMGKRLMEIAKKEGLQAQENAMEELAERVHGDIRMALNHLQYMSLSQSVVKYDD
IRQRLNSSTKDEDISPFTAVDKLFGFNGGRLRMDERIDLSMSDPDLVPLIIQENYINYRPITVG
KDDSGVKRMNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIVPAALMHGNREILEAGE
RNFNRFGGWLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTLLLRQLTDPLKTMPK
DEAVQKVVEFMDTYSLSQEDFDTIVELSKFKGHPNPMDGIQPAVKSALTKAYKQGSSSRVVRAA
DLVNIPGMKKPLKKRVAAILEPVGESLPEENGVASSEGDEEDSSDAENNGSPGGCP*(+)
MKRIPLMLKIMEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTNYLLA
DEDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSDKNSEKQQKSPMKSSPVKVE
RRDGNQITTGKNISPKSNKGSASIDNQKVNIVDRGSLQWTEKYRPKVPNDIVGNQSMVKQLHDW
LRSWEDQFLHSGQKGKGKKQADSGAKKAVLLSGPPGIGKTTTAKVVSQMLGLQAIEVNASDSRG
KADSKIEKGVGGSTSNSIKELISNATLNYSNNRLKRPKAVLVMDEVDGMSAGDRGGVADLIASI
KMSKIPIICICNDRYSQKLKSLVNYCLLLNFRKPTKQQMGKRLMEIAKKEGLQAQENAMEELAE
RVHGDIRMALNHLQYMSLSQSVVKYDDIRQRLNSSTKDEDISPFTAVDKLFGFNGGRLRMDERI
DLSMSDPDLVPLIIQENYINYRPITVGKDDSGVKRMNFLARAAESIADADIVNVQIRRYRQWQL
SQAACLSSSIVPAALMHGNREILEAGERNFNRFGGWLGKYSTTNKNIRLLEDAHSHILASQQAN
LDRESLRLDYLTLLLRQLTDPLKTMPKDEAVQKVVEFMDTYSLSQEDFDTIVELSKFKGHPNPM
DGIQPAVKSALTKAYKQGSSSRVVRAADLVNIPGMKKPLKKRVAAILEPVGESLPEENGVASSE
GDEEDSSDAENNGSPGGCP*(+)
MSNQLNSQGHPPGLPLFSASEESSSSPSDDATPFSSGKLSPTGSRIAATRFFNGFFMPGIFTRS
AARTTRELLPCLYAFVKALLTAG*(-)
MTNVKPVKQSGAPSGTSIIFSIRGILFIAFR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017