Detail information of BGIOSGA035474_circ_g.4


General Information
CircRNA Name BGIOSGA035474_circ_g.4
ID in PlantcircBase osi_circ_003196
Alias 11:18192536|18194496
Organism Oryza sativa ssp. indica
Position chr11: 18192536-18194496  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA035474
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA035474_circ_g.1 BGIOSGA035474_circ_g.2 BGIOSGA035474_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA035474-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCACAGGATGAAGCTGTGCAAAAAGTGGTGGAGTTTATGGATACCTACTCTTTAAGCCAGGAA
GACTTTGACACAATTGTTGAATTATCAAAATTTAAGgaaaactatatcaattatcggcctatca
ctgttgggaaggatgacagtggagttaaaagaatgaattttcttgctcgtgctgctgaatctat
agcggacg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAAACTATATCAATTATCGGCCTATCACTGTTGGGAAGGATGACAGTGGAGTTAAAAGAATGA
ATTTTCTTGCTCGTGCTGCTGAATCTATAGCGGACGCTGATATTGTTAATGTACAAATAAGAAG
ATATCGACAGTGGCAATTGTCCCAAGCTGCTTGTTTGTCTTCATCTATAGTTCCGTAAGTATAT
GGTGGTTATTATCTGCTGTAATCGATTTAATTCAAATGTCTCACTGATCCACTAATCTATTTCA
CATCTTACAGTGCTGCTTTGATGCATGGGAATAGAGAGATCCTTGAAGCAGTAAAGCTCAAACC
TTATCATCAATTACTTTTTTTGTTTAGTTTATTTTTGGTAATTCTGGCTAATTGAATTGGATAA
TAAATCTGTAGGGTGAGCGAAACTTCAATAGGTTTGGTGGATGGTTGGGAAAGTACTCGACCAC
AAATAAAAACATAAGGCTACTGGAAGATGCCCATAGTCATATTCTTGCCTCCCAGCAAGCAAAT
TTGGACAGGTGGATATACTTTTACATATTCTACAAATTTATCCTTTCTGGCATTCCATGGATTC
TGTTTTTACTCTTCACATGTATGATGCATCGTGTATCAGGTTGTAAAGCAAGGTGATTGATTGT
TTTCTTCTCTTGTTTTATTCTGTCACAAGCAGCATCTTAAATATCTGACTAACTATATAAATTT
GCCAAACAAACCCAAGCTTTTTTTTTTTTAGTTTGGTAAGGATTTGAATATTGTTACATCTTTG
GGTTGATATGATCTTAAATTTTTTTTTATCATAGTATTAAGTGTACGGTACTGAGTTAACTAGC
CAAGCTGACTTCCATTGTGCTTATAAATCTGAATGGATTTAGGCCAGTTCATGGTTTCACATAG
ATTTTCATGTTATTATCTGAATAAAAATGTTTTGTGTATTAGTCCTAAATCGTAATTCCAAACC
CTAAGGATAATCAGCTCATCAGTGAATCGGCTAATTAGTTTAGCACTTGGAAGTTGGAACTTAA
TCAAATAACATGGAATTCCAGCATGATATACCTTAATACCTCCATCTATGCTCAAGAAGACAGG
CACTAAATTTCCATTGAATTTCTTTCAATGGCTGGCAACATATTAATTGATGGACATGTCATGC
TTGTTTCCTGATGTTACTATGTTTGAAAATCATGGTTTTCTTAACAGTGAGCAAATTAAACAAG
CCTTACTTTTCTTAACTTGCCTGAATCAGTCAATAAGCCAAGGAAAATCACCATTGGTTTTTGA
ACTTTGTTTTAGCAACATTGAATAAAAACCCATGCCTTTTCAAGATGTTGTGGTCCACATGAGT
ACAATCTGATCTTTAAGATGATTTTTGATGGTTTATCATGAGATAATCCAATCTTATATTGTTG
AGAACTGCAGGGAGTCATTGAGGCTGGATTACCTCACTCTTCTCTTGAGACAATTGACTGATCC
ACTGAAGACAATGCCCAAGGTATATGTAGATGTGATCTATTAATTAACTCCTTGTTTTGTTCTA
TGGCATTATACTTGAATGTTTCATGATGAGGATAATGACCTGGACACTGGCATTTTAGAAATTT
ATCTTGATACCTCTAAATGCATTAGTGGACTAGCCATCTTCTGGAGTATTCTGAAGTAAGGAGT
CTCTTTAATTTCATTTGCTGAAAAAAAAAATCTGCAGGAGAGCGTCCATACCTTGACTTGTGTA
CACGGCTCATCAATTCTGAGTTTTAACATACTGTTATCTTGCCTTTATGTAATAGTATTACCAG
TCTTCTTACAATAATTCCCTGTTAAGAATCTTTACCTGAGCTATCTGCTGGTTATCTTATATTT
GTAAAATCACAGGATGAAGCTGTGCAAAAAGTGGTGGAGTTTATGGATACCTACTCTTTAAGCC
AGGAAGACTTTGACACAATTGTTGAATTATCAAAATTTAAG
Conservation Information
Conserved circRNAs osa_circ_009650*
PMCS
Functional Information
Coding potential Y
Potential coding position 18192597-18194493(+)
Potential amino acid sequence MNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIVPAALMHGNREILEAGERNFNRFGG
WLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTLLLRQLTDPLKTMPKDEAVQKVV
EFMDTYSLSQEDFDTIVELSKFKENYINYRPITVGKDDSGVKRMNFLARAAESIADADIVNVQI
RRYRQWQLSQAACLSSSIVPAALMHGNREILEAGERNFNRFGGWLGKYSTTNKNIRLLEDAHSH
ILASQQANLDRESLRLDYLTLLLRQLTDPLKTMPKDEAVQKVVEFMDTYSLSQEDFDTIVELSK
FKENYINYRPITVGKDDSGVKRMNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIVPA
ALMHGNREILEAGERNFNRFGGWLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTL
LLRQLTDPLKTMPKDEAVQKVVEFMDTYSLSQEDFDTIVELSKFKENYINYRPITVGKDDSGVK
RMNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIVPAALMHGNREILEAGERNFNRFG
GWLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTLLLRQLTDPLKTMPKDEAVQKV
VEFMDTYSLSQEDFDTIVELSKFK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021