Detail information of Os11g0572100_circ_g.6


General Information
CircRNA Name Os11g0572100_circ_g.6
ID in PlantcircBase osa_circ_009649
Alias NA
Organism Oryza sativa
Position chr11: 21449039-21450473  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0572100
Parent gene annotation Similar to DNA ligase (EC 6.5.1.2). (Os11t0572100-01);Similar to
DNA ligase (EC 6.5.1.2). (Os11t0572100-02);Similar to Replicati
on factor C 110 kDa subunit. (Os11t0572100-03);Similar to Replic
ation factor C 110 kDa subunit. (Os11t0572100-04)
Parent gene strand +
Alternative splicing Os11g0572100_circ_g.3 Os11g0572100_circ_g.4 Os11g0572100_circ_g.5 Os11g0572100_circ_g.7 Os11g0572100_circ_g.8
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0572100-04:4
Os11t0572100-02:4
Os11t0572100-01:4
Os11t0572100-03:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAATCTTATATTGTTGAGAACTGCAGGGAGTCATTGAGGCTGGATTACCTCACTCTTCTCTTG
AGACAATTGACTGATCCACTGAAGACAATGCCCAAGgaaaactatatcaattatcggcctatca
ctgttgggaaggatgacagtggagttaaaagaatgaattttcttgctcgtgctgctgaatctat
agcggacg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAAACTATATCAATTATCGGCCTATCACTGTTGGGAAGGATGACAGTGGAGTTAAAAGAATGA
ATTTTCTTGCTCGTGCTGCTGAATCTATAGCGGACGCTGATATTGTTAATGTACAAATAAGAAG
ATATCGACAGTGGCAATTGTCCCAAGCTGCTTGTTTGTCTTCATCTATAGTTCCGTAAGTATAT
GGTGGTTATTATCTGCTGTAATCGATTTAATTCAAATGTCTCACTGATCCACTAATCTATTTCA
CATCTTACAGTGCTGCTTTGATGCATGGGAATAGAGAGATCCTTGAAGCAGTAAAGCTCAAACC
TTATCATCAATTACTTTTTTTGTTTAGTTTATTTTTGGTAATTCTGGCTCATTGAATTGGATAA
TAAATCTGTAGGGTGAGCGAAACTTCAATAGGTTTGGTGGATGGTTGGGAAAGTACTCGACCAC
AAATAAAAACATAAGGCTACTGGAAGATGCCCATAGTCATATTCTTGCCTCCCAGCAAGCAAAT
TTGGACAGGTGGATATACTTTTACATATTCTACAAATTTATCCTTTCTGGCATTCCATGGATTC
TGTTTTTACTCTTCACACGTATGATGCATCGTGTATCAGGTTGTAAAGCAAGGTGATTGATTGT
TTTCTTCTCTTGTTTTATTCTGTCACAAGCGGCATCTTAAATATCTGACTAACTATATAAATTT
GCCAAACAAACCCAAGCTTTTTTTTTTAGTTTGGTAAGGATTTGAATATTGTTACATCTTTGGG
TTGATATGATCTTAATCTTCCATTGTGCTTATAAATCTGAATGGATTTAGGCCAGTTCATGGTT
TCAAATAGATTTTCATGTTATTATCTGAATAAAAATGTTTTGTGTATTAGTCCTAAATCGTAAT
TCCAAACCCTAAGGATAATCAGCTCATCAGTGAATCGGCTAATTAGTTTAGCACTTGGAAGTTA
GAACTTAATCAAATAACATGGAATTCCAGCATGATATACCTTGATACCTCCATCTATGCTCAAG
AAGACAGGCACTAAATTTCCATTGAATTTCTTTCAATGGCTGGCAACATATTAATTGATGGACA
TGTCATGCTTGTTTCCTGATGTTACTATGTTTGAAAATCATGGTTTTCTTAACAGTGAGCAAAT
TAAACAAGCCTTACTTTTCTTAACTTGCCTGAATCAGTCAATAAGCCAAGGAAAATCACCATTG
GTTTTTGAACTTTGTTTTAGCAACATTGAATAAAAACCCATGCCTTTTCAAGATGTTGTGGTCC
ACATGAGTACAATCTGATCTTTAAGATGATTTTCGATGGTTTATCATGAGATAATCCAATCTTA
TATTGTTGAGAACTGCAGGGAGTCATTGAGGCTGGATTACCTCACTCTTCTCTTGAGACAATTG
ACTGATCCACTGAAGACAATGCCCAAG
Conservation Information
Conserved circRNAs osi_circ_009124
PMCS 0.159282375
Functional Information
Coding potential Y
Potential coding position 21449100-21450470(+)
Potential amino acid sequence MNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIVPAALMHGNREILEAGERNFNRFGG
WLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTLLLRQLTDPLKTMPKENYINYRP
ITVGKDDSGVKRMNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIVPAALMHGNREIL
EAGERNFNRFGGWLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTLLLRQLTDPLK
TMPKENYINYRPITVGKDDSGVKRMNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIV
PAALMHGNREILEAGERNFNRFGGWLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYL
TLLLRQLTDPLKTMPKENYINYRPITVGKDDSGVKRMNFLARAAESIADADIVNVQIRRYRQWQ
LSQAACLSSSIVPAALMHGNREILEAGERNFNRFGGWLGKYSTTNKNIRLLEDAHSHILASQQA
NLDRESLRLDYLTLLLRQLTDPLKTMPK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017