Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os11g0572100_circ_g.6 |
ID in PlantcircBase | osa_circ_009649 |
Alias | NA |
Organism | Oryza sativa |
Position | chr11: 21449039-21450473 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os11g0572100 |
Parent gene annotation |
Similar to DNA ligase (EC 6.5.1.2). (Os11t0572100-01);Similar to DNA ligase (EC 6.5.1.2). (Os11t0572100-02);Similar to Replicati on factor C 110 kDa subunit. (Os11t0572100-03);Similar to Replic ation factor C 110 kDa subunit. (Os11t0572100-04) |
Parent gene strand | + |
Alternative splicing | Os11g0572100_circ_g.3 Os11g0572100_circ_g.4 Os11g0572100_circ_g.5 Os11g0572100_circ_g.7 Os11g0572100_circ_g.8 |
Support reads | 1 |
Tissues | shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os11t0572100-04:4 Os11t0572100-02:4 Os11t0572100-01:4 Os11t0572100-03:4 |
Conservation Information | |
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Conserved circRNAs | osi_circ_009124 |
PMCS | 0.159282375 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
21449100-21450470(+) |
Potential amino acid sequence |
MNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIVPAALMHGNREILEAGERNFNRFGG WLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTLLLRQLTDPLKTMPKENYINYRP ITVGKDDSGVKRMNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIVPAALMHGNREIL EAGERNFNRFGGWLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTLLLRQLTDPLK TMPKENYINYRPITVGKDDSGVKRMNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIV PAALMHGNREILEAGERNFNRFGGWLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYL TLLLRQLTDPLKTMPKENYINYRPITVGKDDSGVKRMNFLARAAESIADADIVNVQIRRYRQWQ LSQAACLSSSIVPAALMHGNREILEAGERNFNRFGGWLGKYSTTNKNIRLLEDAHSHILASQQA NLDRESLRLDYLTLLLRQLTDPLKTMPK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |