Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d046579_circ_g.6 |
| ID in PlantcircBase | zma_circ_009985 |
| Alias | Zm09circ00047, ZmciR410 |
| Organism | Zea mays |
| Position | chr9: 96781626-96790442 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | CIRI2 |
| Parent gene | Zm00001d046579 |
| Parent gene annotation |
Transcription initiation factor TFIID subunit 1 |
| Parent gene strand | + |
| Alternative splicing | Zm00001d046579_circ_g.1 Zm00001d046579_circ_g.2 Zm00001d046579_circ_g.3 Zm00001d046579_circ_g.4 Zm00001d046579_circ_g.5 Zm00001d046579_circ_g.7 Zm00001d046579_circ_g.8 Zm00001d046579_circ_g.9 Zm00001d046579_circ_g.10 Zm00001d046579_circ_g.11 Zm00001d046579_circ_g.12 Zm00001d046579_circ_g.13 Zm00001d046579_circ_g.14 |
| Support reads | NA |
| Tissues | leaf, endosperm |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Zm00001d046579_T004:7 Zm00001d046579_T011:8 Zm00001d046579_T006:8 Zm00001d046579_T019:8 Zm00001d046579_T020:8 Zm00001d046579_T016:8 Zm00001d046579_T024:8 Zm00001d046579_T001:8 Zm00001d046579_T027:2 Zm00001d046579_T008:7 Zm00001d046579_T026:3 Zm00001d046579_T023:8 Zm00001d046579_T003:8 Zm00001d046579_T018:8 Zm00001d046579_T015:8 Zm00001d046579_T025:7 Zm00001d046579_T005:8 Zm00001d046579_T009:8 Zm00001d046579_T007:8 Zm00001d046579_T002:7 Zm00001d046579_T029:2 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.132631832 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
96781686-96790439(+) |
| Potential amino acid sequence |
MFGNVDDSGDLDADYLDEDAKEHLFALADKLGPSLKDIDLMKSSPAPTDPSEQDYDEKAEDAVD YEDIDEEYDGPEVEATTEEDNVLSKKDYFSSSTVYASVNSTVSVFDDENYDEEEEPPNDNEPPG DSAAQNLSSVSIEQADTTTSSDNLAMEKIGLLSHPEENMDFEYEDLENEKGTGEGQLEPESATS LPVLCIEDGNAILRFSEIFGIQEPVRKVKTDHHKRPVDKELQIANVADNVEEDEELILRSTMQN FSTLKHIHVNEDFVESDSDESISDVTLRLKDSCLSEQPMKDVHMDIRIVQRSPTCPDFYPLEHY DWESDIIWNNSPATDQQAYAKICESEESEDTHGEDQGKDYGQASRCWDVQSKTNGSPVIKETFC CTEMPAPANYCPPGKSYPPLTNEDNLDHIMPNNLDDAVKIDTMVRLNNLSVLNRELLEGSWLDN IIWDPNEVTPKPKLIFDLKDDHMLFEILDEKNVDHLQSHARAMIVSQSTKTSTPTVDNFGDQPK PLSGRFNISNDKFYSNRKTPQQAKSHTKKRALMGIKVVHSAPAHKLQTMKPVLSNKEIANFHRP RAKWYPHENKIASQLQGPACSHGRMAVLLMSLGGKGVKILVNAEDTPVSVKLKASKKFDDDDDE DYEEPGGGNHLLGFMFGNVDDSGDLDADYLDEDAKEHLFALADKLGPSLKDIDLMKSSPAPTDP SEQDYDEKAEDAVDYEDIDEEYDGPEVEATTEEDNVLSKKDYFSSSTVYASVNSTVSVFDDENY DEEEEPPNDNEPPGDSAAQNLSSVSIEQADTTTSSDNLAMEKIGLLSHPEENMDFEYEDLENEK GTGEGQLEPESATSLPVLCIEDGNAILRFSEIFGIQEPVRKVKTDHHKRPVDKELQIANVADNV EEDEELILRSTMQNFSTLKHIHVNEDFVESDSDESISDVTLRLKDSCLSEQPMKDVHMDIRIVQ RSPTCPDFYPLEHYDWESDIIWNNSPATDQQAYAKICESEESEDTHGEDQGKDYGQASRCWDVQ SKTNGSPVIKETFCCTEMPAPANYCPPGKSYPPLTNEDNLDHIMPNNLDDAVKIDTMVRLNNLS VLNRELLEGSWLDNIIWDPNEVTPKPKLIFDLKDDHMLFEILDEKNVDHLQSHARAMIVSQSTK TSTPTVDNFGDQPKPLSGRFNISNDKFYSNRKTPQQAKSHTKKRALMGIKVVHSAPAHKLQTMK PVLSNKEIANFHRPRAKWYPHENKIASQLQGPACSHGRMAVLLMSLGGKGVKILVNAEDTPVSV KLKASKKFDDDDDEDYEEPGGGNHLLGFMFGNVDDSGDLDADYLDEDAKEHLFALADKLGPSLK DIDLMKSSPAPTDPSEQDYDEKAEDAVDYEDIDEEYDGPEVEATTEEDNVLSKKDYFSSSTVYA SVNSTVSVFDDENYDEEEEPPNDNEPPGDSAAQNLSSVSIEQADTTTSSDNLAMEKIGLLSHPE ENMDFEYEDLENEKGTGEGQLEPESATSLPVLCIEDGNAILRFSEIFGIQEPVRKVKTDHHKRP VDKELQIANVADNVEEDEELILRSTMQNFSTLKHIHVNEDFVESDSDESISDVTLRLKDSCLSE QPMKDVHMDIRIVQRSPTCPDFYPLEHYDWESDIIWNNSPATDQQAYAKICESEESEDTHGEDQ GKDYGQASRCWDVQSKTNGSPVIKETFCCTEMPAPANYCPPGKSYPPLTNEDNLDHIMPNNLDD AVKIDTMVRLNNLSVLNRELLEGSWLDNIIWDPNEVTPKPKLIFDLKDDHMLFEILDEKNVDHL QSHARAMIVSQSTKTSTPTVDNFGDQPKPLSGRFNISNDKFYSNRKTPQQAKSHTKKRALMGIK VVHSAPAHKLQTMKPVLSNKEIANFHRPRAKWYPHENKIASQLQGPACSHGRMAVLLMSLGGKG VKILVNAEDTPVSVKLKASKKFDDDDDEDYEEPGGGNHLLGFMFGNVDDSGDLDADYLDEDAKE HLFALADKLGPSLKDIDLMKSSPAPTDPSEQDYDEKAEDAVDYEDIDEEYDGPEVEATTEEDNV LSKKDYFSSSTVYASVNSTVSVFDDENYDEEEEPPNDNEPPGDSAAQNLSSVSIEQADTTTSSD NLAMEKIGLLSHPEENMDFEYEDLENEKGTGEGQLEPESATSLPVLCIEDGNAILRFSEIFGIQ EPVRKVKTDHHKRPVDKELQIANVADNVEEDEELILRSTMQNFSTLKHIHVNEDFVESDSDESI SDVTLRLKDSCLSEQPMKDVHMDIRIVQRSPTCPDFYPLEHYDWESDIIWNNSPATDQQAYAKI CESEESEDTHGEDQGKDYGQASRCWDVQSKTNGSPVIKETFCCTEMPAPANYCPPGKSYPPLTN EDNLDHIMPNNLDDAVKIDTMVRLNNLSVLNRELLEGSWLDNIIWDPNEVTPKPKLIFDLKDDH MLFEILDEKNVDHLQSHARAMIVSQSTKTSTPTVDNFGDQPKPLSGRFNISNDKFYSNRKTPQQ AKSHTKKRALMGIKVVHSAPAHKLQTMKPVLSNKEIANFHRPRAKWYPHENKIASQLQGPACSH GRMAVLLMSLGGKGVKILVNAEDTPVSVKLKASKKF(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | responsive to drought stress |
| Other Information | |
|---|---|
| References | Han et al., 2020;Zhang et al., 2019 |