Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d046579_circ_g.6 |
ID in PlantcircBase | zma_circ_009985 |
Alias | Zm09circ00047, ZmciR410 |
Organism | Zea mays |
Position | chr9: 96781626-96790442 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d046579 |
Parent gene annotation |
Transcription initiation factor TFIID subunit 1 |
Parent gene strand | + |
Alternative splicing | Zm00001d046579_circ_g.1 Zm00001d046579_circ_g.2 Zm00001d046579_circ_g.3 Zm00001d046579_circ_g.4 Zm00001d046579_circ_g.5 Zm00001d046579_circ_g.7 Zm00001d046579_circ_g.8 Zm00001d046579_circ_g.9 Zm00001d046579_circ_g.10 Zm00001d046579_circ_g.11 Zm00001d046579_circ_g.12 Zm00001d046579_circ_g.13 Zm00001d046579_circ_g.14 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d046579_T004:7 Zm00001d046579_T011:8 Zm00001d046579_T006:8 Zm00001d046579_T019:8 Zm00001d046579_T020:8 Zm00001d046579_T016:8 Zm00001d046579_T024:8 Zm00001d046579_T001:8 Zm00001d046579_T027:2 Zm00001d046579_T008:7 Zm00001d046579_T026:3 Zm00001d046579_T023:8 Zm00001d046579_T003:8 Zm00001d046579_T018:8 Zm00001d046579_T015:8 Zm00001d046579_T025:7 Zm00001d046579_T005:8 Zm00001d046579_T009:8 Zm00001d046579_T007:8 Zm00001d046579_T002:7 Zm00001d046579_T029:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.132631832 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
96781686-96790439(+) |
Potential amino acid sequence |
MFGNVDDSGDLDADYLDEDAKEHLFALADKLGPSLKDIDLMKSSPAPTDPSEQDYDEKAEDAVD YEDIDEEYDGPEVEATTEEDNVLSKKDYFSSSTVYASVNSTVSVFDDENYDEEEEPPNDNEPPG DSAAQNLSSVSIEQADTTTSSDNLAMEKIGLLSHPEENMDFEYEDLENEKGTGEGQLEPESATS LPVLCIEDGNAILRFSEIFGIQEPVRKVKTDHHKRPVDKELQIANVADNVEEDEELILRSTMQN FSTLKHIHVNEDFVESDSDESISDVTLRLKDSCLSEQPMKDVHMDIRIVQRSPTCPDFYPLEHY DWESDIIWNNSPATDQQAYAKICESEESEDTHGEDQGKDYGQASRCWDVQSKTNGSPVIKETFC CTEMPAPANYCPPGKSYPPLTNEDNLDHIMPNNLDDAVKIDTMVRLNNLSVLNRELLEGSWLDN IIWDPNEVTPKPKLIFDLKDDHMLFEILDEKNVDHLQSHARAMIVSQSTKTSTPTVDNFGDQPK PLSGRFNISNDKFYSNRKTPQQAKSHTKKRALMGIKVVHSAPAHKLQTMKPVLSNKEIANFHRP RAKWYPHENKIASQLQGPACSHGRMAVLLMSLGGKGVKILVNAEDTPVSVKLKASKKFDDDDDE DYEEPGGGNHLLGFMFGNVDDSGDLDADYLDEDAKEHLFALADKLGPSLKDIDLMKSSPAPTDP SEQDYDEKAEDAVDYEDIDEEYDGPEVEATTEEDNVLSKKDYFSSSTVYASVNSTVSVFDDENY DEEEEPPNDNEPPGDSAAQNLSSVSIEQADTTTSSDNLAMEKIGLLSHPEENMDFEYEDLENEK GTGEGQLEPESATSLPVLCIEDGNAILRFSEIFGIQEPVRKVKTDHHKRPVDKELQIANVADNV EEDEELILRSTMQNFSTLKHIHVNEDFVESDSDESISDVTLRLKDSCLSEQPMKDVHMDIRIVQ RSPTCPDFYPLEHYDWESDIIWNNSPATDQQAYAKICESEESEDTHGEDQGKDYGQASRCWDVQ SKTNGSPVIKETFCCTEMPAPANYCPPGKSYPPLTNEDNLDHIMPNNLDDAVKIDTMVRLNNLS VLNRELLEGSWLDNIIWDPNEVTPKPKLIFDLKDDHMLFEILDEKNVDHLQSHARAMIVSQSTK TSTPTVDNFGDQPKPLSGRFNISNDKFYSNRKTPQQAKSHTKKRALMGIKVVHSAPAHKLQTMK PVLSNKEIANFHRPRAKWYPHENKIASQLQGPACSHGRMAVLLMSLGGKGVKILVNAEDTPVSV KLKASKKFDDDDDEDYEEPGGGNHLLGFMFGNVDDSGDLDADYLDEDAKEHLFALADKLGPSLK DIDLMKSSPAPTDPSEQDYDEKAEDAVDYEDIDEEYDGPEVEATTEEDNVLSKKDYFSSSTVYA SVNSTVSVFDDENYDEEEEPPNDNEPPGDSAAQNLSSVSIEQADTTTSSDNLAMEKIGLLSHPE ENMDFEYEDLENEKGTGEGQLEPESATSLPVLCIEDGNAILRFSEIFGIQEPVRKVKTDHHKRP VDKELQIANVADNVEEDEELILRSTMQNFSTLKHIHVNEDFVESDSDESISDVTLRLKDSCLSE QPMKDVHMDIRIVQRSPTCPDFYPLEHYDWESDIIWNNSPATDQQAYAKICESEESEDTHGEDQ GKDYGQASRCWDVQSKTNGSPVIKETFCCTEMPAPANYCPPGKSYPPLTNEDNLDHIMPNNLDD AVKIDTMVRLNNLSVLNRELLEGSWLDNIIWDPNEVTPKPKLIFDLKDDHMLFEILDEKNVDHL QSHARAMIVSQSTKTSTPTVDNFGDQPKPLSGRFNISNDKFYSNRKTPQQAKSHTKKRALMGIK VVHSAPAHKLQTMKPVLSNKEIANFHRPRAKWYPHENKIASQLQGPACSHGRMAVLLMSLGGKG VKILVNAEDTPVSVKLKASKKFDDDDDEDYEEPGGGNHLLGFMFGNVDDSGDLDADYLDEDAKE HLFALADKLGPSLKDIDLMKSSPAPTDPSEQDYDEKAEDAVDYEDIDEEYDGPEVEATTEEDNV LSKKDYFSSSTVYASVNSTVSVFDDENYDEEEEPPNDNEPPGDSAAQNLSSVSIEQADTTTSSD NLAMEKIGLLSHPEENMDFEYEDLENEKGTGEGQLEPESATSLPVLCIEDGNAILRFSEIFGIQ EPVRKVKTDHHKRPVDKELQIANVADNVEEDEELILRSTMQNFSTLKHIHVNEDFVESDSDESI SDVTLRLKDSCLSEQPMKDVHMDIRIVQRSPTCPDFYPLEHYDWESDIIWNNSPATDQQAYAKI CESEESEDTHGEDQGKDYGQASRCWDVQSKTNGSPVIKETFCCTEMPAPANYCPPGKSYPPLTN EDNLDHIMPNNLDDAVKIDTMVRLNNLSVLNRELLEGSWLDNIIWDPNEVTPKPKLIFDLKDDH MLFEILDEKNVDHLQSHARAMIVSQSTKTSTPTVDNFGDQPKPLSGRFNISNDKFYSNRKTPQQ AKSHTKKRALMGIKVVHSAPAHKLQTMKPVLSNKEIANFHRPRAKWYPHENKIASQLQGPACSH GRMAVLLMSLGGKGVKILVNAEDTPVSVKLKASKKF(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |