Detail information of Zm00001d046579_circ_g.6


General Information
CircRNA Name Zm00001d046579_circ_g.6
ID in PlantcircBase zma_circ_009985
Alias Zm09circ00047, ZmciR410
Organism Zea mays
Position chr9: 96781626-96790442  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2
Parent gene Zm00001d046579
Parent gene annotation Transcription initiation factor TFIID subunit 1
Parent gene strand +
Alternative splicing Zm00001d046579_circ_g.1 Zm00001d046579_circ_g.2 Zm00001d046579_circ_g.3 Zm00001d046579_circ_g.4 Zm00001d046579_circ_g.5 Zm00001d046579_circ_g.7 Zm00001d046579_circ_g.8 Zm00001d046579_circ_g.9 Zm00001d046579_circ_g.10 Zm00001d046579_circ_g.11 Zm00001d046579_circ_g.12 Zm00001d046579_circ_g.13 Zm00001d046579_circ_g.14
Support reads NA
Tissues leaf, endosperm
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d046579_T004:7
Zm00001d046579_T011:8
Zm00001d046579_T006:8
Zm00001d046579_T019:8
Zm00001d046579_T020:8
Zm00001d046579_T016:8
Zm00001d046579_T024:8
Zm00001d046579_T001:8
Zm00001d046579_T027:2
Zm00001d046579_T008:7
Zm00001d046579_T026:3
Zm00001d046579_T023:8
Zm00001d046579_T003:8
Zm00001d046579_T018:8
Zm00001d046579_T015:8
Zm00001d046579_T025:7
Zm00001d046579_T005:8
Zm00001d046579_T009:8
Zm00001d046579_T007:8
Zm00001d046579_T002:7
Zm00001d046579_T029:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTGTTTTACTTATGTCATTGGGAGGAAAAGGAGTCAAGATTCTGGTCAATGCTGAGGACACTC
CGGTCTCTGTCAAATTAAAAGCATCAAAGAAGTTCGatgacgatgacgacgaggattatgagga
gcctggtggaggaaatcacttattggggtttatgttcggcaatgtagatgattctggtgattta
gatgctga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1962
Transcript exons: 96781626-96781738,96782350-96782412,96782495-96782537,96
782693-96782944,96785388-96785500,96785596-96785764,9678
6544-96787549,96790240-96790442
ATGACGATGACGACGAGGATTATGAGGAGCCTGGTGGAGGAAATCACTTATTGGGGTTTATGTT
CGGCAATGTAGATGATTCTGGTGATTTAGATGCTGACTATCTTGATGAGGATGCAAAGGAACAC
CTTTTTGCACTGGCAGATAAGCTTGGTCCATCTCTCAAAGACATTGACCTAATGAAGTCTTCTC
CAGCACCAACTGATCCTTCCGAACAAGACTATGATGAGAAGGCAGAAGATGCTGTTGATTATGA
AGATATTGATGAAGAATATGATGGACCTGAAGTTGAGGCAACTACAGAGGAAGACAATGTGTTG
TCAAAAAAGGATTACTTCTCTTCATCTACAGTGTATGCATCAGTCAACAGTACAGTTTCAGTGT
TTGACGATGAAAACTACGATGAGGAAGAAGAACCACCCAATGATAATGAGCCTCCTGGTGATAG
TGCTGCCCAAAATTTATCTTCAGTTTCTATCGAGCAGGCAGATACGACAACCTCAAGCGATAAC
CTTGCCATGGAAAAGATTGGCTTGTTATCACATCCAGAGGAAAACATGGACTTTGAATATGAAG
ATTTGGAGAATGAAAAGGGCACTGGGGAAGGCCAGCTTGAGCCTGAAAGTGCAACTTCCCTTCC
TGTTTTATGCATAGAGGATGGGAACGCTATCCTGAGATTCTCTGAAATTTTTGGTATCCAAGAG
CCTGTAAGAAAAGTGAAGACAGATCACCACAAACGACCAGTGGATAAAGAGCTTCAGATCGCAA
ATGTTGCTGACAATGTTGAAGAAGATGAGGAACTAATTCTCCGGAGCACTATGCAAAATTTCTC
AACTTTGAAGCACATTCATGTGAATGAAGATTTTGTTGAGAGTGACAGTGATGAGTCTATTTCT
GATGTCACTTTAAGGCTAAAGGATTCATGTCTTTCAGAACAACCAATGAAAGATGTGCATATGG
ATATTCGTATTGTCCAGCGATCTCCAACTTGTCCTGATTTTTATCCACTTGAGCATTATGATTG
GGAAAGTGATATCATTTGGAACAATTCACCAGCAACTGATCAGCAGGCTTATGCAAAAATCTGT
GAATCTGAAGAGAGTGAGGACACTCATGGTGAAGACCAGGGTAAGGATTATGGCCAGGCCTCCA
GGTGTTGGGATGTACAGAGTAAAACCAATGGTTCTCCAGTAATTAAAGAGACTTTTTGTTGTAC
AGAAATGCCTGCTCCAGCTAACTACTGCCCCCCTGGGAAAAGTTACCCTCCATTGACAAACGAA
GATAACTTAGATCACATAATGCCAAATAACTTAGATGATGCAGTTAAAATTGACACCATGGTGC
GTTTAAATAACCTTAGTGTACTAAACAGGGAATTATTAGAAGGATCATGGTTGGACAACATAAT
TTGGGATCCTAATGAGGTTACCCCAAAGCCTAAACTGATCTTTGACCTCAAAGATGATCATATG
CTTTTTGAGATCCTAGATGAAAAGAATGTGGACCATCTCCAGTCTCATGCTCGTGCTATGATTG
TTAGCCAGTCAACTAAGACTTCAACACCAACAGTTGACAATTTTGGCGATCAACCAAAGCCATT
GAGTGGCAGGTTCAACATCTCCAATGACAAGTTTTATTCAAATAGGAAGACTCCACAACAAGCT
AAATCTCATACTAAAAAACGCGCTTTAATGGGCATAAAGGTGGTGCATTCTGCTCCAGCTCATA
AGCTGCAAACCATGAAGCCAGTGTTGAGCAATAAGGAAATTGCAAACTTTCATAGACCAAGAGC
TAAGTGGTACCCACATGAAAATAAAATTGCCTCTCAGTTACAAGGACCTGCTTGTAGCCATGGG
AGGATGGCTGTTTTACTTATGTCATTGGGAGGAAAAGGAGTCAAGATTCTGGTCAATGCTGAGG
ACACTCCGGTCTCTGTCAAATTAAAAGCATCAAAGAAGTTCG

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.132631832
Functional Information
Coding potential Y
Potential coding position 96781686-96790439(+)
Potential amino acid sequence MFGNVDDSGDLDADYLDEDAKEHLFALADKLGPSLKDIDLMKSSPAPTDPSEQDYDEKAEDAVD
YEDIDEEYDGPEVEATTEEDNVLSKKDYFSSSTVYASVNSTVSVFDDENYDEEEEPPNDNEPPG
DSAAQNLSSVSIEQADTTTSSDNLAMEKIGLLSHPEENMDFEYEDLENEKGTGEGQLEPESATS
LPVLCIEDGNAILRFSEIFGIQEPVRKVKTDHHKRPVDKELQIANVADNVEEDEELILRSTMQN
FSTLKHIHVNEDFVESDSDESISDVTLRLKDSCLSEQPMKDVHMDIRIVQRSPTCPDFYPLEHY
DWESDIIWNNSPATDQQAYAKICESEESEDTHGEDQGKDYGQASRCWDVQSKTNGSPVIKETFC
CTEMPAPANYCPPGKSYPPLTNEDNLDHIMPNNLDDAVKIDTMVRLNNLSVLNRELLEGSWLDN
IIWDPNEVTPKPKLIFDLKDDHMLFEILDEKNVDHLQSHARAMIVSQSTKTSTPTVDNFGDQPK
PLSGRFNISNDKFYSNRKTPQQAKSHTKKRALMGIKVVHSAPAHKLQTMKPVLSNKEIANFHRP
RAKWYPHENKIASQLQGPACSHGRMAVLLMSLGGKGVKILVNAEDTPVSVKLKASKKFDDDDDE
DYEEPGGGNHLLGFMFGNVDDSGDLDADYLDEDAKEHLFALADKLGPSLKDIDLMKSSPAPTDP
SEQDYDEKAEDAVDYEDIDEEYDGPEVEATTEEDNVLSKKDYFSSSTVYASVNSTVSVFDDENY
DEEEEPPNDNEPPGDSAAQNLSSVSIEQADTTTSSDNLAMEKIGLLSHPEENMDFEYEDLENEK
GTGEGQLEPESATSLPVLCIEDGNAILRFSEIFGIQEPVRKVKTDHHKRPVDKELQIANVADNV
EEDEELILRSTMQNFSTLKHIHVNEDFVESDSDESISDVTLRLKDSCLSEQPMKDVHMDIRIVQ
RSPTCPDFYPLEHYDWESDIIWNNSPATDQQAYAKICESEESEDTHGEDQGKDYGQASRCWDVQ
SKTNGSPVIKETFCCTEMPAPANYCPPGKSYPPLTNEDNLDHIMPNNLDDAVKIDTMVRLNNLS
VLNRELLEGSWLDNIIWDPNEVTPKPKLIFDLKDDHMLFEILDEKNVDHLQSHARAMIVSQSTK
TSTPTVDNFGDQPKPLSGRFNISNDKFYSNRKTPQQAKSHTKKRALMGIKVVHSAPAHKLQTMK
PVLSNKEIANFHRPRAKWYPHENKIASQLQGPACSHGRMAVLLMSLGGKGVKILVNAEDTPVSV
KLKASKKFDDDDDEDYEEPGGGNHLLGFMFGNVDDSGDLDADYLDEDAKEHLFALADKLGPSLK
DIDLMKSSPAPTDPSEQDYDEKAEDAVDYEDIDEEYDGPEVEATTEEDNVLSKKDYFSSSTVYA
SVNSTVSVFDDENYDEEEEPPNDNEPPGDSAAQNLSSVSIEQADTTTSSDNLAMEKIGLLSHPE
ENMDFEYEDLENEKGTGEGQLEPESATSLPVLCIEDGNAILRFSEIFGIQEPVRKVKTDHHKRP
VDKELQIANVADNVEEDEELILRSTMQNFSTLKHIHVNEDFVESDSDESISDVTLRLKDSCLSE
QPMKDVHMDIRIVQRSPTCPDFYPLEHYDWESDIIWNNSPATDQQAYAKICESEESEDTHGEDQ
GKDYGQASRCWDVQSKTNGSPVIKETFCCTEMPAPANYCPPGKSYPPLTNEDNLDHIMPNNLDD
AVKIDTMVRLNNLSVLNRELLEGSWLDNIIWDPNEVTPKPKLIFDLKDDHMLFEILDEKNVDHL
QSHARAMIVSQSTKTSTPTVDNFGDQPKPLSGRFNISNDKFYSNRKTPQQAKSHTKKRALMGIK
VVHSAPAHKLQTMKPVLSNKEIANFHRPRAKWYPHENKIASQLQGPACSHGRMAVLLMSLGGKG
VKILVNAEDTPVSVKLKASKKFDDDDDEDYEEPGGGNHLLGFMFGNVDDSGDLDADYLDEDAKE
HLFALADKLGPSLKDIDLMKSSPAPTDPSEQDYDEKAEDAVDYEDIDEEYDGPEVEATTEEDNV
LSKKDYFSSSTVYASVNSTVSVFDDENYDEEEEPPNDNEPPGDSAAQNLSSVSIEQADTTTSSD
NLAMEKIGLLSHPEENMDFEYEDLENEKGTGEGQLEPESATSLPVLCIEDGNAILRFSEIFGIQ
EPVRKVKTDHHKRPVDKELQIANVADNVEEDEELILRSTMQNFSTLKHIHVNEDFVESDSDESI
SDVTLRLKDSCLSEQPMKDVHMDIRIVQRSPTCPDFYPLEHYDWESDIIWNNSPATDQQAYAKI
CESEESEDTHGEDQGKDYGQASRCWDVQSKTNGSPVIKETFCCTEMPAPANYCPPGKSYPPLTN
EDNLDHIMPNNLDDAVKIDTMVRLNNLSVLNRELLEGSWLDNIIWDPNEVTPKPKLIFDLKDDH
MLFEILDEKNVDHLQSHARAMIVSQSTKTSTPTVDNFGDQPKPLSGRFNISNDKFYSNRKTPQQ
AKSHTKKRALMGIKVVHSAPAHKLQTMKPVLSNKEIANFHRPRAKWYPHENKIASQLQGPACSH
GRMAVLLMSLGGKGVKILVNAEDTPVSVKLKASKKF(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Han et al., 2020;Zhang et al., 2019