Detail information of BGIOSGA031734_circ_g.2


General Information
CircRNA Name BGIOSGA031734_circ_g.2
ID in PlantcircBase osi_circ_008494
Alias Chr10:18884982_18885579(MH63RS2), Chr10:18884982_18885579(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 15793814-15794447  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method CIRI2, CIRI2
Parent gene BGIOSGA031734
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031734_circ_igg.1 BGIOSGA031734_circ_igg.2 BGIOSGA031731_circ_igg.1 BGIOSGA031734_circ_g.1 BGIOSGA033093_circ_g.1 BGIOSGA033093_circ_g.2 BGIOSGA031731_circ_g.1 BGIOSGA031731_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered BGIOSGA031734-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTACACTAAAAACATAAAAGACAGACCTTTGAAGGATGAATATCCATAGATAAGATGCCTGGT
TTGTTTGTCTTGTGAAGTGGATGACTGGAGATCTGGgttacaaagagctcatcccgaggaacaa
atttcaaactggttatctatatatatgaaggttccaatgttaacataaattttagagatagatt
aaaaatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTACAAAGAGCTCATCCCGAGGAACAAATTTCAAACTGGTTATCTATATATATGAAGGTTCCA
ATGTTAACATAAATTTTAGAGATAGATTAAAAATCAATTGAGTGCATCTAAATCATCAAAATAA
AATGAGGGAAAACCTTCTTTGAGTGACCAGTAAGTGTGCACAAGATTTGACCGGATGACCTGTC
AAAAAGCACTGCGTTTGTATCAATGCCACCAGTTGCAATAATGTCCTGTTAATCCAGAATAAGA
ACAAAGTAAAATAATTCCTGTTAATCCAGAATAAGAACAAAGTAAAATAATAAGTATTTAAATC
ACCGTTTGCCATCAAATTATCAACATTAAATCCAAGACGAATCAAACAGATAACAAAATAAAAC
AAACTACATGTGAACCAAGCTTTTCAGGAGAGCATCATGTTGCAGGTACAAATAGAAGTATTAG
TGATATAATTATTCAATTAATGTGAAATCTTACACCTAATTGAACTGAAAAGGATAAGACCACA
GAGTATATGATATTCAAAGCAAGGTACACTAAAAACATAAAAGACAGACCTTTGAAGGATGAAT
ATCCATAGATAAGATGCCTGGTTTGTTTGTCTTGTGAAGTGGATGACTGGAGATCTGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021