Detail information of EPlOSAG00000048437_circ_ig.1


General Information
CircRNA Name EPlOSAG00000048437_circ_ig.1
ID in PlantcircBase osa_circ_017560
Alias Os03circ00607
Organism Oryza sativa
Position chr3: 712197-715173  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method SMALT, Segemehl
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0108800_circ_ag.1 Os03g0109300_circ_g.1 Os03g0109300_circ_g.2 Os03g0109300_circ_g.3 Os03g0109300_circ_g.4 Os03g0109400_circ_g.1 Os03g0109400_circ_g.2 Os03g0109400_circ_g.3 Os03g0109400_circ_g.4 Os03g0109400_circ_g.5 Os03g0109400_circ_g.6 Os03g0109600_circ_g.1 Os03g0109600_circ_g.2 Os03g0109900_circ_g.1 Os03g0109900_circ_g.2 Os03g0109900_circ_g.3 Os03g0109900_circ_g.4 Os03g0109900_circ_g.5 Os03g0109900_circ_g.6 Os03g0110400_circ_g.1 Os03g0110400_circ_g.2 Os03g0110400_circ_g.3 Os03g0110400_circ_g.4 Os03g0110400_circ_g.5 Os03g0110500_circ_g.1 Os03g0110900_circ_g.1 Os03g0111100_circ_g.1 Os03g0111100_circ_g.2 Os03g0111100_circ_g.3 Os03g0111100_circ_g.4 Os03g0111100_circ_g.5 Os03g0111100_circ_g.6 Os03g0111100_circ_g.7 Os03g0111100_circ_g.8 Os03g0111100_circ_g.9 Os03g0111100_circ_g.10 Os03g0111100_circ_g.11 Os03g0111200_circ_g.1 Os03g0111200_circ_g.2 Os03g0111200_circ_g.3 Os03g0111400_circ_g.1 Os03g0111400_circ_g.2 Os03g0111500_circ_g.1 Os03g0111500_circ_g.2 Os03g0111500_circ_g.3 Os03g0111600_circ_g.1 Os03g0111600_circ_g.2 Os03g0111700_circ_g.1 Os03g0111700_circ_g.2 Os03g0111800_circ_g.1 Os03g0112101_circ_g.1 Os03g0112101_circ_g.2 Os03g0112101_circ_igg.1 Os03g0112101_circ_ig.1 Os03g0112101_circ_ig.2 Os03g0112101_circ_ig.3 Os03g0112101_circ_ig.4 Os03g0112101_circ_ig.5 Os03g0112101_circ_ig.6 Os03g0112101_circ_ig.7 Os03g0112101_circ_ig.8 Os03g0112400_circ_g.1 Os03g0112400_circ_igg.1 EPlOSAG00000048437_circ_ig.2 Os03g0112600_circ_ig.1 Os03g0112700_circ_g.1 Os03g0112700_circ_g.2 Os03g0112700_circ_g.3 Os03g0112700_circ_g.4 Os03g0112700_circ_g.5 Os03g0112700_circ_g.6 Os03g0112700_circ_g.7 Os03g0112800_circ_g.1 Os03g0112800_circ_g.2 Os03g0113500_circ_g.1 Os03g0113500_circ_g.2 Os03g0113500_circ_g.3 Os03g0113500_circ_g.4 Os03g0113500_circ_g.5 Os03g0113700_circ_g.1 Os03g0113800_circ_g.1 Os03g0113800_circ_g.2 Os03g0113800_circ_g.3 Os03g0113800_circ_g.4 Os03g0113800_circ_g.5 Os03g0113800_circ_g.6 Os03g0113800_circ_g.7 EPlOSAG00000003330_circ_ig.1 Os03g0114000_circ_g.1 Os03g0114300_circ_g.1 Os03g0114300_circ_g.2 Os03g0114300_circ_g.3 Os03g0114300_circ_g.4 Os03g0114300_circ_g.5 Os03g0114300_circ_g.6 Os03g0114300_circ_g.7 Os03g0114300_circ_g.8 Os03g0114300_circ_g.9 Os03g0114300_circ_g.10 Os03g0114300_circ_g.11 Os03g0115100_circ_g.1 Os03g0115400_circ_g.1 Os03g0115400_circ_g.2 Os03g0115400_circ_ig.1 Os03g0115700_circ_g.1 Os03g0116000_circ_g.1 Os03g0116000_circ_g.2 Os03g0116300_circ_g.1 Os03g0116300_circ_g.2 Os03g0116300_circ_g.3 Os03g0116300_circ_g.4 Os03g0116300_circ_g.5 Os03g0116300_circ_g.6 Os03g0116400_circ_g.1 Os03g0116400_circ_g.2 Os03g0116700_circ_g.1 Os03g0116700_circ_g.2 Os03g0116900_circ_igg.1 Os03g0117100_circ_g.1 Os03g0117100_circ_g.2 Os03g0117100_circ_g.3 Os03g0117100_circ_g.4 Os03g0117800_circ_g.1 Os03g0117800_circ_g.2 Os03g0118400_circ_g.1
Support reads 2
Tissues leaf and panicle
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCGGGAAGAAGATGACAAATTTTGCACTTGAGATAATGAACTTAAACAAAAAGGAGATTATC
ACGATGGACACAGTATCAAATCAGGATTTTACAGAGgaggaggaggaggtggcgaccgaccgcc
ggattggaccgcctccgcgacgaccgccgctgaacccatcgccgatccatggagggagcagccg
ccgccgcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGGAGGAGGAGGTGGCGACCGACCGCCGGATTGGACCGCCTCCGCGACGACCGCCGCTGAACC
CATCGCCGATCCATGGAGGGAGCAGCCGCCGCCGCCGGCGGCGGGGAGATGCTATCCCCAGGTG
AGGCGGACTGGCCTCCCGAGCTGCGGCTCCCACCGCCGCCCCCGCCCTCCGCCGCATCGGAGGG
GGAGCCGCCGCCCGCGCGGGCCGCGGTGGGGATGGATGACTCGCAGTTCCTCGGATCGATCATC
GGCTTGCCCGCCCAGCCGCCGCAGGCCACGGCCGAGGCGCTCGCGGTGGTCGGGGTCAAGAGGA
GGAGAGGGAGGCCGCCGAAGAAGAGGGACGGGGCGGCGGCGGCGACGGCGGTTGTTCCCGCGGC
GAGGCCTGCGAGGAGGAGGGAGGACGAGGAGGAGGTCGTCTGCTTCATCTGCTTCGACGGGGGC
AACCTCGTCGTGTGCGATCGGAGGTGGGTGGGTGGGTTGGGTGGGTGGATTGCTGCTTGCGTTT
TTTTGGATACCTCGGAAAAATTCAACTGAGACGCGCGCCTGTGTTTTTGCCTCCATGTAGGGGA
TGCCCTAAGGTCTACCATCCGGCCTGCATCAAGCGCGATGAGGCATTCTTCCAATCTCGCAGCA
AGTGGAATTGCGGTGAGCTCATCCTGCTCGCCATTGTTTTGCTCTCCTGCTGCTCACTGCTAAC
TAGCAAGCTGAGCATAAATGTGCTAACATATTTATTGGCTCGTTGTTACCAATAATAGCCAAAG
GCACCAGATGGAAAAATGAAGGTGGATAATAATAGATAACTCGCACGCGTGTTTGCCGTGTAGC
TTGGGGGAGATGATTCGCCGCCCAATCAGTGTTAGAATCGATTAGAGCTGTCAGATGCGCGCCT
TGAGAACTGCTCTAGCTAGCTTTGCATGCTACACTGCTGTTGCTGTCTTATTGTGGGATGCTAG
AAGAAACACTACCTTTTCATGATTGAATGAACAAGGTTCTTCCTCATCCGAGAAATCATGGACT
GATATTTCACATAAATCCAAATCCGAGAGCAAAAGGGGAAAAATGATCTTATTATTATTTCCAA
ACTTTTGCTCATGATGGTTCTTTTAATGGCTTCCATAGTTTTGCAGTAAAGTTTTGGTAGTATC
TACAATTTCGCATAGGGAAAATTATAGACTCCGCAATTGACGAAAACATACTAAAATTGCACTT
CTGACATTTTGCGCCAGGTTGGCACATATGCAGCAGCTGTGAAAAGGCAGTGCACTACATGTGC
TATACGTGTACATACTCCCTTTGCAAAGTATGCATCAAGCAAGGTAAATTTTTCAGTGTCAGGG
GGACCAAGGGCTTCTGCGATACCTGTTATTCAACTATACTGTTGATAGAATCCAAAGATGAAGG
TGATACAAAGGTATGCCTATTACCAACCACAAAAATATTCTGCTTTTTTTTTCTCAAAACATCT
GTTTTTGGTCATTCCTTCTTCGGAAGAAATTGTATGCGGCATGTATATTGCGCGGCCTCCTTTA
ATCGTAACCCCCCTCCTCCTCCCCTCCCCTTAAAAAAAGAGGAAATAATTACACACACAAAATA
ACAACAGCAACATGTTAGCACACTACATGATTTGTGCGGTTGCACTATTTGAAAGTGATTTTGA
TATCAGGTCCTGTTCAAGTTGCATCTTTGCTCAAGCTCTGCTATATGTTTCCTTCGATTTCATG
TTCTTGCATCTCAGCTTTTTCACAGTTTATAGCTTTGCGCTTCAAATTCTAAAAGTTTCACGCC
TTTTCATGTGTGTGTTGAGTTCATTGCAGATTGTTGTTGATTTTGATGATCAAAATAGTTGGGA
ATACCTGTTCAAGCTATATTGGGTGGATCTGAAAGGGAAGCTTTCATTAACATTGGAAGAACTA
ACTAGCGCCAAGGCTCGATGGAATGCACCTACTACTTACACTAGGAAAGAAAAGGATGAGTCAT
CTGATGACCTTTATGATGCTAATAATGACGATGATGCTGGTTCTGACTGCTCCTCAGGAAAGCG
AAAGAGAAATTCTTCGAGAAAAAAGGGTCGAAAACGTCGGAAACCAAATTCTGATTGTAGCATT
GCCACAAAAAAGGTTGAGACTGTTACTAGAGATGATGGAACCCTGCCCAACAAGGTACCAACTG
AAGAGGCGTCCTTGCCGGTAGACACCAAATGGGCTTCGCCAGAGCTACTGGAGTTTGTAGGGCA
CATGAGAGATGGCGATCAATCTTTTATTTCCCAGTTTGATGTTCAGGCTCTTTTGCTTGACTAT
ATAAAACAGAACAACCTCCGTGACCCTCAAAGAAAGAGTCAAATTATCTGTGACTCAAGGCTTC
ACCGTTTATTCAGGAAAACACGCGTCGCTCATTTTGAGATGTTGAAGCTTTTGGAGATGCACTT
TATTGTAAGTGAGCCTTCTGCAGTAAATGATGGTAGCCAAGGGATTATCAATCCTGATTCAGCT
CAAATAGATCATGCCAGTGGATATAATGACATGGCAGCAAAGTTCTCTCCTGATAGGAGACGAA
GGATGCATAGAAAGATGGAAAGAGAACCACAGGCTAATCCTGAAGATTACGCAGCAATTGATAT
GCATAATATTAACCTAATTTACCTGCGCCGTAGCTTGATGGAGGATCTTATTGATGATCCCACA
TTGTCAGACAAAATTTCTGGTGCTTTTGTCAGGATAAGAATTTCGGGACTTGGTCAGAAGCAAG
ATATGTATCGTCTGGTGAAAGTTGTCGGTAAGATATTTAACCTCTAACATCTATCTATACAGTT
ATTCATTTAATTGAATATAAGTTTTTTGTGCAGGGACACATAAGGTTTCAGAAAAATACAGCAT
CGGGAAGAAGATGACAAATTTTGCACTTGAGATAATGAACTTAAACAAAAAGGAGATTATCACG
ATGGACACAGTATCAAATCAGGATTTTACAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.144239875
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015