Detail information of Os03g0262300_circ_g.6


General Information
CircRNA Name Os03g0262300_circ_g.6
ID in PlantcircBase osa_circ_018981
Alias Os_ciR5398
Organism Oryza sativa
Position chr3: 8588433-8592747  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os03g0262300
Parent gene annotation Hypothetical conserved gene. (Os03t0262300-01)
Parent gene strand -
Alternative splicing Os03g0262300_circ_g.3 Os03g0262300_circ_g.4 Os03g0262300_circ_g.5 Os03g0262300_circ_g.7 Os03g0262300_circ_g.8 Os03g0262300_circ_g.9 Os03g0262300_circ_g.10
Support reads 3/2
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0262300-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGGCAATTCATGCTGTACCCTTTCGTGTTGTTTGCTTTCAAAAAGAGAGGCATGGAAACAGGA
ACTAGATGCTAACAGGCACTCATCATCAACATCAATcatttttctagaccatgtgatttagttg
cttcctcgaacttctgccttacataagccccatttctcatatcggatgtatttacctagaaaaa
cgtcacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTTTTCTAGACCATGTGATTTAGTTGCTTCCTCGAACTTCTGCCTTACATAAGCCCCATTTC
TCATATCGGATGTATTTACCTAGAAAAACGTCACAAACTTCCATCAGAATAAAAAAATCAAGCT
TTAGAAATCAGAGTTGAAATTTCAGGAATAAATTTTGCTGAAGTACTGTAAACTAGGTAACGAG
AATACTCAGAATTCTGTTCATGTCCCATGTCCTAGTTTTCTCTAAAATGAAAGCACTGCATTTT
GAATAGCATGTGTCCATAATTCCATATTAACATAACATTTTTACTGACTGTAACCTATAAAAAC
CTATAACCCCTGACACTACTGCATTTTTACAATCAAGTATGTCTGGAACAAGTTCAAGATTATA
CTTTAGAATATATCCAAACATAAGGATGAAGACAGAACCGATTATAGGCCATGGACCTTTACTT
AGCCTTTTATCATATGTTAGCTTGATTAGACCAACAGACAAATCATAAATGCATAACTCAAATA
ATCAGGTGGTAGAGAACCTTAAGTTTTGTCTGTGCTTACTAGACAATGAAGTTTGATTACGCTT
AGAGAACTAGACATGATTATGAACTTGATGTCATCATTATGGATATGAGCTAGCTAAGTGCCTC
ATAATAATAACGAAATTCCATAGTAGCTAAAGCAAGACTGATCCACACCAGTATGGGTGCGCAT
GGAGGTGGTTATGTTAGCATTTCTCATATATACAAACGAAACCCAAATAACCAAGCCAGGTGAC
ACCTCATAGCGAGCAAAAAAAAATGGATTTCAGCTAATTTCTGGGCATCACCATATCTTAACAA
AGTCGAGTTCAAATAAGCACATTCCACAATATCAGTATAACTAAAACCCTCCTTGAATTCAAAA
CATGAGACCCAACCCAAGAGGGGCGAGTTGAGCCCAACTTTAGCCCATGCATGTGGGCGTGAGT
GCATGGTAGAATAGTACCATCTTGCTAGTTTAACGAGTGATGTACCAACATATATACCAAGTAC
CAAAACACTTCAACCCCCATGTAACCCTTTTACACGAAGCAAAGACAAATGCATAAGCTAAGGT
TTGTGTGAGCGGTGTAATCTACCCAAAATGGGATTAGGCTCAATTTCAATGAGATCTTTCAGTT
TCTTCTGCCAGAAGCTCCCCCAAACAGCGCCATATTTTATATGTTCAAAATTATTTATTCCTCT
ATACATAGAGTACCTTGAATGTGCAGAAATGGATATAATAGAATTTCTATTCATATGAACAAAT
ACTCTAGTGGGAATGTACTTGATGCTAGGATGACTGGAGTCATGAAGCTTGTCAGGTTTCAGAT
CCAGGGTTTGAGCAAGAAGCTTGTTGTGCGGTAAGAATGGGAACACAACTGTTTTGGGCATATT
AAGCTGGTCGTGTCAAGAGAGGGATGGAAAAGCATATACTAAATCACCCTTAGATTTTTCATGT
TCCTAAGGGAGGAACATGTGTGTGTTGTACTCCCTCCATCTACTTTTGATAGTCATATTTCATC
TTGACACACAGAACAATGATAAGTGGTTCTACTTATCATTCATTTAAATATGCTACTAGTCATT
CCTCGTAAACAAGCGATTCATTAATATTTACATTTCTCGATGCCCATGTAGCTAATCTTGTGTG
GAAGAATGGAGAGTCACGCATTAAATCCAAGAAAGCCATTAAGATGATAAGTTGTTAGATTGAA
ATATGCCTATCAAAAATAAATTTTTCAGATTTGGAAATATGCCTATCAAAAGTAGATGGAGGGA
GTATATAAATAAAGGACTTCCAATACAGTATTATCATTTTTACAGCATTTTAATGTTACAAAAA
AGTCCCGAATTGGTAGATATTGTAGAGAAAAACAGGCGAAAAGGAAAGAAGAAGCTGAAAGGAT
TCATCAAGCCAAAATATATTAGTATCTTAGTACACAAATAATATAGGAATATGGAAGCTCTTAC
AAGGTAGAGAAAAATGGAATTCCAGACAATACCTCAATTACATTGAATCCTTGTTCTCTCGCAC
ATGCAAAAACTGCGGCTGATTTTCCACACTGTAAAAATGAACAAAGAGAATGAAGAAGCAGCTT
TGCAGCTGGGAACAAAACTGATTGCTTATAGGTTGGTACACCTTTTTTTTCAAGTACAGCATAC
AAAAATATATAATAGAATACTATAGGAGCATCAATTGATTGCAGCCAGTAATCTTATGTTACCA
CACCTTCATGTGGAGAAAAAAGTGGTCGAAAACTTACTATTCTGCCTAGACGTAGCTTAGTACT
TTCAAACGTACAGACCAATTCAAATTCCCGACAAGTTCCAGGGGGTGTAAAAATTATTGTCCCG
AGCTCAAACAAATAAGATAAGGCTCCCCCCCCCTCTTCCCCTCTCACACACACAAACCCCCCAC
AAAACACACACGCACGCGAACACACAAGGAGATGATGCCCAGCAAATTCAAAAGAAAAAACAAA
ACAATACGTGAAGCATACAATGCAAACGGCAAGTAATCTTCAAAATGGAACTCACCCCAACTGG
TCCAGTAATTAGAAGCACATTCTCATAATCAGAAGCATCTTCTGAATAATCTGTATCAGAACCA
TCTTGACAGGATCTACCATTCATGCTCCCGTTAGTAACTATATTCTGTTTATTTCTGTGACCTC
TTTCATCCCACCCTTTAAGCCACTCATTGAGGAATTTTACATGCTTGGAATTACCACAAACCTG
ATCAACCAAGATAAAATAGTAATCTCAGAGCAAGTATAACCATATCTGAAGGTATTATTTTGTG
AGTTCATAAAAATAGCATGTTGGCTAAAAAACCTGATCAAATAGAAACAATTGGAAACAGGCAG
CGAGATTTTATTATGAAATATATGATTCGTACTGCCAATATGTAGAATAAATTGTGATGTTTAC
CTGTGCAGCAGTTTCAGGCCGGTACTTGTCAGTCCATAGGTTAGCTGTCTGACAGCTACAAGAG
CAAATATTATGTTATTTGCCATCAAACCTATAGAGATAAAGGCTGATGCAAAAAATATATCATG
CAAAATCTAGATTATTGACACTAGCTCAGTTGACCTATTGGCTACAACAAAACAATGAAAATTT
TCATGCCACCATCAATAATGAAATCAACAGTTTTTTTTTCAGAAATGGCAGTCATAAAAAGACA
ACTATGCGGTGCCAGCAGCATTTTACTTTGCATTATTGTGTTACGCTGATTGACACTATCAGGC
CATTAGTAATGTGCAACTCAAAAGGGATAGAAATATATGAGGAATGGAGCACAATTGATGCAAA
TTTAAGTACTATTATATTGTGCAATAGGCTACATTCCATAAAGAAATTGTTAGAGTATATGGTA
GTTAGAGGGATGTTAGGATAGGATTGATTTGTATCATAGTCTTCCTTATCTCTAGATCCCCTTA
TCTCTTGTACTCTATACAGTATATACCAGCCCCCTAAGTCTCAATACAATCGTCCAGTTACATA
GTATATTTCTCTCCCTCAACTATTCAACAGAAATATTATGAGGTAGGCTATCAAAGAAAAGATA
ATAGGACATAGAACCAGTAGGTGCCAAGAAAAGAATGAACATGAAAACAACGTAAGTGTAAAAC
AAAGTAGCATCCTAATGGCTGACACCACTTAAGTGAGCATTAAAACAGACACCAAACAGAGGGC
GGGCTTGTTTGCTACTCCCTCCATTCCAAAATATAAGGCACAACTATCACTAACACGAAGACTA
AAAAAATATTATTTTCACTTTCTCGTTTGGATCACCCCAATAAATGAAATGCATGCACCCAATG
GGATCAAGGATCTTGAGGGTAGGGGATTTTTGTTATTAAAAAAAATAGGGGAGGGGTGTGTGCT
AGTTAATTGCATGCATGAATGCATGCCCTCCCAGTCAAAAAAAAAATGCATGCTCTGTACTATG
GAACATCAAAAAAAAAGTTGTGCCCTATATTTTGGAATGGAGGGAGTATTAATTTTGACCAGTA
CTTGTGAGTGTCAGGAGTTTACGCTTTGCAACTTCATAGGCTGGTGAGGTTCAAATGATTATTG
ATTTTCTTTTTCATTTGTGATCTGAAGGCAAAATTAAGACAACAAGAAGAAAGGTAGTCCTGTC
CAGCACACATCAAGGCAAATAGTGTCCAATGCAGTTTACCCTTTCGGAGTGACTTCAGGCAATT
CATGCTGTACCCTTTCGTGTTGTTTGCTTTCAAAAAGAGAGGCATGGAAACAGGAACTAGATGC
TAACAGGCACTCATCATCAACATCAAT
Conservation Information
Conserved circRNAs osi_circ_014165
PMCS 0.09700298
Functional Information
Coding potential Y
Potential coding position 8588437-8588434(-)
Potential amino acid sequence MIDVDDECLLASSSCFHASLFESKQHERVQHELPEVTPKGCQTANLWTDKYRPETAAQVCGNSK
HVKFLNEWLKGWDERGHRNKQNIVTNGSMNGRSCQDGSDTDYSEDASDYENVLLITGPVGCGKS
AAVFACAREQGFNVIEVNTSDMRNGAYVRQKFEEATKSHGLEK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017