Detail information of Os03g0648400_circ_g.3


General Information
CircRNA Name Os03g0648400_circ_g.3
ID in PlantcircBase osa_circ_020805
Alias NA
Organism Oryza sativa
Position chr3: 25127573-25127770  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os03g0648400
Parent gene annotation Similar to DnaJ protein. (Os03t0648400-01);Similar to DnaJ prote
in homolog (DNAJ-1). (Os03t0648400-02);Similar to DnaJ protein h
omolog (DNAJ-1). (Os03t0648400-03);Non-protein coding transcript
. (Os03t0648400-04)
Parent gene strand +
Alternative splicing Os03g0648400_circ_g.1 Os03g0648400_circ_g.2 Os03g0648400_circ_g.4 Os03g0648400_circ_g.5 Os03g0648400_circ_g.6 Os03g0648400_circ_g.7 Os03g0648400_circ_g.8 Os03g0648400_circ_g.9 Os03g0648400_circ_g.10 Os03g0648450_circ_g.1 Os03g0648450_circ_g.2
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   GA-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGTCCCGTCGCGGATGATGGATCGGGGGGCGGGCGGAACATCATCTCGTTTTGTTACTTTAGGC
CTGGTAGGATTTGCAGTCTGCGGTTCATGTGGGGGgtccgagcccgatcccgatcccccaccct
cctcctccgttctaccggatctcagggccgcttgctccctttctcgatccgacgcgatctggtt
cgatcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCCGAGCCCGATCCCGATCCCCCACCCTCCTCCTCCGTTCTACCGGATCTCAGGGCCGCTTGC
TCCCTTTCTCGATCCGACGCGATCTGGTTCGATCCCGTCCCGTCGCGGATGATGGATCGGGGGG
CGGGCGGAACATCATCTCGTTTTGTTACTTTAGGCCTGGTAGGATTTGCAGTCTGCGGTTCATG
TGGGGG
Conservation Information
Conserved circRNAs NA
PMCS 0.218181818
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017