Detail information of Os03g0648400_circ_g.5


General Information
CircRNA Name Os03g0648400_circ_g.5
ID in PlantcircBase osa_circ_020807
Alias NA
Organism Oryza sativa
Position chr3: 25129124-25129534  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0648400
Parent gene annotation Similar to DnaJ protein. (Os03t0648400-01);Similar to DnaJ prote
in homolog (DNAJ-1). (Os03t0648400-02);Similar to DnaJ protein h
omolog (DNAJ-1). (Os03t0648400-03);Non-protein coding transcript
. (Os03t0648400-04)
Parent gene strand +
Alternative splicing Os03g0648400_circ_g.1 Os03g0648400_circ_g.2 Os03g0648400_circ_g.3 Os03g0648400_circ_g.4 Os03g0648400_circ_g.6 Os03g0648400_circ_g.7 Os03g0648400_circ_g.8 Os03g0648400_circ_g.9 Os03g0648400_circ_g.10 Os03g0648450_circ_g.1 Os03g0648450_circ_g.2
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0648400-02:2
Os03t0648400-03:2
Os03t0648400-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTGATCCATCCGCTTAAGGTTTCTCTAGAAGATCTTTACAATGGTACTTCAAAGAAGCTCTC
TCTTTCCCGCAATGTCCTCTGCGCCAAGTGCAAGGGttcaaggagcttgcacaagcttatgagg
tattgagtgacccggagaaacgtgaaatctatgaccaatatggtgaagatgccctcaaggaagg
aatgggtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTCAAGGAGCTTGCACAAGCTTATGAGGTATTGAGTGACCCGGAGAAACGTGAAATCTATGACC
AATATGGTGAAGATGCCCTCAAGGAAGGAATGGGTGGAGGCGGATCCCATGTTGATCCATTTGA
CATCTTTTCATCATTCTTTGGACCTTCTTTTGGTGGTATTTTTTGAAGACAATACATTTTCCTG
TGTGATTGTGTTGAACTCTGTTAATCTCTTGTTTTGTTGATGTAATGAAATTTCGTTTGTTTAT
GTTTTGAGCACAGGTGGTGGCAGCAGCAGGGGCAGAAGGCAAAGGAGGGGAGAGGATGTGATCC
ATCCGCTTAAGGTTTCTCTAGAAGATCTTTACAATGGTACTTCAAAGAAGCTCTCTCTTTCCCG
CAATGTCCTCTGCGCCAAGTGCAAGGG
Conservation Information
Conserved circRNAs NA
PMCS 0.431473439
Functional Information
Coding potential Y
Potential coding position 25129218-25129154(+)
25129478-25129146(+)
25129239-25129474(-)
Potential amino acid sequence MGGGGSHVDPFDIFSSFFGPSFGGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNV
LCAKCKGSRSLHKLMRY*(+)
MVLQRSSLFPAMSSAPSARVQGACTSL*(+)
MGSASTHSFLEGIFTILVIDFTFLRVTQYLISLCKLLEPLHLAQRTLRERESFFEVPL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017