Detail information of Os03g0648400_circ_g.1


General Information
CircRNA Name Os03g0648400_circ_g.1
ID in PlantcircBase osa_circ_020803
Alias Os_ciR8706
Organism Oryza sativa
Position chr3: 25127367-25129283  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os03g0648400
Parent gene annotation Similar to DnaJ protein. (Os03t0648400-01);Similar to DnaJ prote
in homolog (DNAJ-1). (Os03t0648400-02);Similar to DnaJ protein h
omolog (DNAJ-1). (Os03t0648400-03);Non-protein coding transcript
. (Os03t0648400-04)
Parent gene strand +
Alternative splicing Os03g0648400_circ_g.2 Os03g0648400_circ_g.3 Os03g0648400_circ_g.4 Os03g0648400_circ_g.5 Os03g0648400_circ_g.6 Os03g0648400_circ_g.7 Os03g0648400_circ_g.8 Os03g0648400_circ_g.9 Os03g0648400_circ_g.10 Os03g0648450_circ_g.1 Os03g0648450_circ_g.2
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os03t0648400-03:2
Os03t0648400-01:2
Os03t0648400-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACCAATATGGTGAAGATGCCCTCAAGGAAGGAATGGGTGGAGGCGGATCCCATGTTGATCCAT
TTGACATCTTTTCATCATTCTTTGGACCTTCTTTTGgcggcggcacgggagcggctagtggttt
cgtcggcggaggcggaggcggggccaagatgttcgggcgcgcgccgaagaagagcgacaacacc
aagtacta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCGGCGGCACGGGAGCGGCTAGTGGTTTCGTCGGCGGAGGCGGAGGCGGGGCCAAGATGTTCGG
GCGCGCGCCGAAGAAGAGCGACAACACCAAGTACTACGAGATCCTGGGGGTCCCCAAGACCGCC
TCCCAGGACGACCTCAAGAAGGCGTACCGCAAGGCCGCCATCAAGAACCACCCCGACAAGGGCG
GCGACCCCGAGAAGGTCCGAGCCCGATCCCGATCCCCCACCCTCCTCCTCCGTTCTACCGGATC
TCAGGGCCGCTTGCTCCCTTTCTCGATCCGACGCGATCTGGTTCGATCCCGTCCCGTCGCGGAT
GATGGATCGGGGGGCGGGCGGAACATCATCTCGTTTTGTTACTTTAGGCCTGGTAGGATTTGCA
GTCTGCGGTTCATGTGGGGGGAATTTGGGCGGCGAGCGGGCGGGCGATCAAAGATTTGCTCGGT
TTTACTTGTTGCTGAGGGGGTGGGTTAGTGTGAATTGTGAATTTGTGATGCGATCATGGCCATG
ATCTTGGGGGTTTGTGGGGGGAACAATAGACTGGATTCGTAACATCAAGTAGACTGTGCAGATT
CTTCTGCTACAATAGAACCAATAGAGGAGACCACTGAAACAGCGATCCGTGCGATCTTTAAGTG
CTTTCAGAATTCAGATGTTCGTTTTCCCAAGTTTTATGCGCTAGTTACTTCCCAAGAATTTTCC
GCTGCGCTTGAGGTTTGCTGGATCATTTTTAATTTGCGTTGTGGTTATCTATCAAGATCATTAG
CTAGCTGAAATGGACTTACAAAGTCTGTTTGTGTTCAGATAGTATTCATTTTCAGAGAACCATC
TAGCTCATTGCTGGGTTGTAATCTTATACTGACACCGTAAGATATTTCATTGTTCTCATTCTGC
CATACCTCAGCGAAGCATCTATAGCTGTGAAATGCCCCATTGAATCTAGCTCATTGCTGGGTTG
TATTGTTATACTGACCCTGTAAGATATTTCGTTGTTCTCATTCTGCCTCAGCGAAGCATCTTTA
GCTGTGAAATGCTCCATTGATTGCATCTTTAATTCTCGCATCGGATAACATCTTGAGTAACGGC
TGTACTGGAATGTTTAAAACTGGTAGCATTAGGGCATTGTTCTTCAGGCAAAGTATCCTTTGGT
GATCATAGGACTACTCATTCTAGCTGTGATTCAAATCCACTTGCTAATTAATTGTTTAGGAAAA
GCGCTTGTTTGGGTAGTCCGGTAATGTGACTTTCAATTAAATGTTTCTATATGTTGGGAGTATT
TTGTCTGTTTAAATCCTATTAGATTTTGCTCTGCCCCTTTATGTTTAGCACTGTATCTTACATG
ATGAAATATTGTTTTTAATTCTTATGCTCCTTATCATAATACTTCTGAGTTCGATACTTCCTCC
GTTTCACAATGTAAGAGTTTCTAGCATTGCCCGCATTCATTTAGATGTTAATGAACCTAGACAT
GTGTATGTGTTTAGATTCATTAACATCTATATGAATGTGGGCAATGCTAGAAAGACTTACATTG
TGAAACGGAGGGAGTATAAATTTTGTTACTGCATATTGGAGTCAACAAATGCTTATTGTCTTAT
TGAATGCGACATGGAATGGCGAATATAGCATATATCCATATAGTGATCACAACTATATTTCCTT
TTGTTTACTGCTTTTTCAGTCATCCATGTATTCATAATCTGTAGAATGAAAGAGGCTAATTTTA
GGCATATCTTTGTTTTAATTTTATCTCAGTTCAAGGAGCTTGCACAAGCTTATGAGGTATTGAG
TGACCCGGAGAAACGTGAAATCTATGACCAATATGGTGAAGATGCCCTCAAGGAAGGAATGGGT
GGAGGCGGATCCCATGTTGATCCATTTGACATCTTTTCATCATTCTTTGGACCTTCTTTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.244586937
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015