Detail information of Os03g0648400_circ_g.7


General Information
CircRNA Name Os03g0648400_circ_g.7
ID in PlantcircBase osa_circ_041484
Alias NA
Organism Oryza sativa
Position chr3: 25129159-25129479  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os03g0648400
Parent gene annotation Similar to DnaJ protein. (Os03t0648400-01);Similar to DnaJ prote
in homolog (DNAJ-1). (Os03t0648400-02);Similar to DnaJ protein h
omolog (DNAJ-1). (Os03t0648400-03);Non-protein coding transcript
. (Os03t0648400-04)
Parent gene strand +
Alternative splicing Os03g0648400_circ_g.1 Os03g0648400_circ_g.2 Os03g0648400_circ_g.3 Os03g0648400_circ_g.4 Os03g0648400_circ_g.5 Os03g0648400_circ_g.6 Os03g0648400_circ_g.8 Os03g0648400_circ_g.9 Os03g0648400_circ_g.10 Os03g0648450_circ_g.1 Os03g0648450_circ_g.2
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os03t0648400-03:2
Os03t0648400-01:2
Os03t0648400-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTTTGAGCACAGGTGGTGGCAGCAGCAGGGGCAGAAGGCAAAGGAGGGGAGAGGATGTGATCC
ATCCGCTTAAGGTTTCTCTAGAAGATCTTTACAATGtgacccggagaaacgtgaaatctatgac
caatatggtgaagatgccctcaaggaaggaatgggtggaggcggatcccatgttgatccatttg
acatcttt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 215
Transcript exons: 25129159-25129286,25129393-25129479
TGACCCGGAGAAACGTGAAATCTATGACCAATATGGTGAAGATGCCCTCAAGGAAGGAATGGGT
GGAGGCGGATCCCATGTTGATCCATTTGACATCTTTTCATCATTCTTTGGACCTTCTTTTGGTG
GTGGTGGCAGCAGCAGGGGCAGAAGGCAAAGGAGGGGAGAGGATGTGATCCATCCGCTTAAGGT
TTCTCTAGAAGATCTTTACAATG

Genomic sequence TGACCCGGAGAAACGTGAAATCTATGACCAATATGGTGAAGATGCCCTCAAGGAAGGAATGGGT
GGAGGCGGATCCCATGTTGATCCATTTGACATCTTTTCATCATTCTTTGGACCTTCTTTTGGTG
GTATTTTTTGAAGACAATACATTTTCCTGTGTGATTGTGTTGAACTCTGTTAATCTCTTGTTTT
GTTGATGTAATGAAATTTCGTTTGTTTATGTTTTGAGCACAGGTGGTGGCAGCAGCAGGGGCAG
AAGGCAAAGGAGGGGAGAGGATGTGATCCATCCGCTTAAGGTTTCTCTAGAAGATCTTTACAAT
G
Conservation Information
Conserved circRNAs NA
PMCS 0.415534579
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study