Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT2G07360_circ_g.12 |
ID in PlantcircBase | ath_circ_013027 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr2: 3054074-3055450 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT2G07360 |
Parent gene annotation |
SH3 domain-containing protein |
Parent gene strand | - |
Alternative splicing | AT2G07360_circ_g.5 AT2G07360_circ_g.6 AT2G07360_circ_g.7 AT2G07360_circ_g.8 AT2G07360_circ_g.9 AT2G07360_circ_g.10 AT2G07360_circ_g.11 AT2G07360_circ_g.13 AT2G07360_circ_g.14 AT2G07360_circ_g.15 AT2G07360_circ_g.16 |
Support reads | 5 |
Tissues | inflorescences |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT2G07360.2:5 AT2G07360.1:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.115222065 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3054564-3054076(-) |
Potential amino acid sequence |
MRSNLQYAAMSALRRLPLDPGNPLFLHRAAQGVFFADPVAVRHSLEILSELATRDPYTVAMTLE KLASPTVHARRLQALKALTYSPSGNSELLSKLYEIVFGILEKVGDVPHKRKKGVFGTKGGDKES IMRSNLQYAAMSALRRLPLDPGNPLFLHRAAQGVFFADPVAVRHSLEILSELATRDPYTVAMTL EKLASPTVHARRLQALKALTYSPSGNSELLSKLYEIVFGILEKVGDVPHKRKKGVFGTKGGDKE SIMRSNLQYAAMSALRRLPLDPGNPLFLHRAAQGVFFADPVAVRHSLEILSELATRDPYTVAMT LEKLASPTVHARRLQALKALTYSPSGNSELLSKLYEIVFGILEKVGDVPHKRKKGVFGTKGGDK ESIMRSNLQYAAMSALRRLPLDPGNPLFLHRAAQGVFFADPVAVRHSLEILSELATRDPYTVAM TLEKLASPT(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |