Detail information of AT2G07360_circ_g.12


General Information
CircRNA Name AT2G07360_circ_g.12
ID in PlantcircBase ath_circ_013027
Alias NA
Organism Arabidpsis thaliana
Position chr2: 3054074-3055450  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G07360
Parent gene annotation SH3 domain-containing protein
Parent gene strand -
Alternative splicing AT2G07360_circ_g.5 AT2G07360_circ_g.6 AT2G07360_circ_g.7 AT2G07360_circ_g.8 AT2G07360_circ_g.9 AT2G07360_circ_g.10 AT2G07360_circ_g.11 AT2G07360_circ_g.13 AT2G07360_circ_g.14 AT2G07360_circ_g.15 AT2G07360_circ_g.16
Support reads 5
Tissues inflorescences
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G07360.2:5
AT2G07360.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAATGCCAAATACAATCTCATACAATTTTGACAAAAGCTCAGAATTGCCTGATGGTGAATATG
TCAGAGCTTTCAAAGCTTGCAGTCGTCGAGCATGAActgttggagacgcaagcttttctgcagc
aaaaagatcaagagacacatatcaagttttgaatgaaaaacagttatgtctctacacacagaaa
tagaatga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTTGGAGACGCAAGCTTTTCTGCAGCAAAAAGATCAAGAGACACATATCAAGTTTTGAATGA
AAAACAGTTATGTCTCTACACACAGAAATAGAATGAAAAAAACAATATAAGGGGGAATAGAACA
AATTATTTACCTAATGTCATTGCTACTGTATAGGGGTCTCTTGTGGCTAACTCAGATAGAATTT
CCAGTGAATGCCTCACCGCAACAGGATCAGCAAAGAAAACACTGCAACATAAAAGTGTGAATAC
GAGAATAACTGTCCAATATACTGCATAATTAGGAATAGACCAAAAATTCAATTGCTCTTGTGAA
ACCTACATCACTATACTTAAATCCAATACTCTATACTTAAAAAGATAGTAGAAAGAACCAAAAA
AAAAGTCTTACCCCTGAGCTGCACGGTGCAGAAAAAGTGGATTTCCTGGATCAAGAGGGAGTCT
TCTCAGTGCACTCATAGCAGCGTATTGCAAGTTACTTCGCATAATCGACTAACAAAAACGAGAT
AAAACGCTCAAGTTAATAACAAAGTTTAGTGTTGACCTTCTGCAATCCAGAAGCTGTATACTCA
AGTGAGGAAGAATTCTATTCGTCTGCCTACATATCTAGAAGCTAAGTTATCAAAGTTGTTCCTT
TGGCTTATTGATAATCTGATATACGAATAGAATTGTAATGTTTTAAAAAAATGGTTTTATTAAT
TCAAATAACATTTAACTCGGGCCTTAAAAATCTGATAGCTAATAGCCAGAGTCTCCAGATGTGC
AAACTCATATCATTATAGAGCAACTATGATACACTGCCTAATGCATGCAGTCATCAACAAGAAT
TTTGAGAAATTTCTACCCTACAGCAGGCAAAGAACATGCAGAGCATTGTAAAAAAGAAAATTAT
AAAGTGCAGGAACATGACTAGTATATAAGCCTTAAGTCTTTTCCTGGAGGAACCTAAGAGTTTA
GAAAGATACCTCTTTATCACCCCCTTTTGTCCCAAATACACCTTTCTTTCGTTTATGCGGAACA
TCACCAACCTGAAAGCGACAAGAAAGATAAATCAGGGCCTCTGCATGTCACTGGGAAAACCCCC
GTAAATTAAACCACACTCATATGAAAAGCAATAAGAATAAAATAGTATAATTGTATATAAATAA
GAAAAGGTGGGACTACGGTTAAATCACGCAGAGTGCAGACAATGAACTACGCCAGGGTTTATTA
AAAATAAACAAAGCATCTTGTTAAAAATCATAGAGCATTGGCAGTCAGACAAACCTTTTCAAGA
ATGCCAAATACAATCTCATACAATTTTGACAAAAGCTCAGAATTGCCTGATGGTGAATATGTCA
GAGCTTTCAAAGCTTGCAGTCGTCGAGCATGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.115222065
Functional Information
Coding potential Y
Potential coding position 3054564-3054076(-)
Potential amino acid sequence MRSNLQYAAMSALRRLPLDPGNPLFLHRAAQGVFFADPVAVRHSLEILSELATRDPYTVAMTLE
KLASPTVHARRLQALKALTYSPSGNSELLSKLYEIVFGILEKVGDVPHKRKKGVFGTKGGDKES
IMRSNLQYAAMSALRRLPLDPGNPLFLHRAAQGVFFADPVAVRHSLEILSELATRDPYTVAMTL
EKLASPTVHARRLQALKALTYSPSGNSELLSKLYEIVFGILEKVGDVPHKRKKGVFGTKGGDKE
SIMRSNLQYAAMSALRRLPLDPGNPLFLHRAAQGVFFADPVAVRHSLEILSELATRDPYTVAMT
LEKLASPTVHARRLQALKALTYSPSGNSELLSKLYEIVFGILEKVGDVPHKRKKGVFGTKGGDK
ESIMRSNLQYAAMSALRRLPLDPGNPLFLHRAAQGVFFADPVAVRHSLEILSELATRDPYTVAM
TLEKLASPT(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017