Detail information of Os03g0112101_circ_ig.2


General Information
CircRNA Name Os03g0112101_circ_ig.2
ID in PlantcircBase osa_circ_017551
Alias Os03circ00592
Organism Oryza sativa
Position chr3: 704372-704476  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method SMALT, Segemehl
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0108800_circ_ag.1 Os03g0109300_circ_g.1 Os03g0109300_circ_g.2 Os03g0109300_circ_g.3 Os03g0109300_circ_g.4 Os03g0109400_circ_g.1 Os03g0109400_circ_g.2 Os03g0109400_circ_g.3 Os03g0109400_circ_g.4 Os03g0109400_circ_g.5 Os03g0109400_circ_g.6 Os03g0109600_circ_g.1 Os03g0109600_circ_g.2 Os03g0109900_circ_g.1 Os03g0109900_circ_g.2 Os03g0109900_circ_g.3 Os03g0109900_circ_g.4 Os03g0109900_circ_g.5 Os03g0109900_circ_g.6 Os03g0110400_circ_g.1 Os03g0110400_circ_g.2 Os03g0110400_circ_g.3 Os03g0110400_circ_g.4 Os03g0110400_circ_g.5 Os03g0110500_circ_g.1 Os03g0110900_circ_g.1 Os03g0111100_circ_g.1 Os03g0111100_circ_g.2 Os03g0111100_circ_g.3 Os03g0111100_circ_g.4 Os03g0111100_circ_g.5 Os03g0111100_circ_g.6 Os03g0111100_circ_g.7 Os03g0111100_circ_g.8 Os03g0111100_circ_g.9 Os03g0111100_circ_g.10 Os03g0111100_circ_g.11 Os03g0111200_circ_g.1 Os03g0111200_circ_g.2 Os03g0111200_circ_g.3 Os03g0111400_circ_g.1 Os03g0111400_circ_g.2 Os03g0111500_circ_g.1 Os03g0111500_circ_g.2 Os03g0111500_circ_g.3 Os03g0111600_circ_g.1 Os03g0111600_circ_g.2 Os03g0111700_circ_g.1 Os03g0111700_circ_g.2 Os03g0111800_circ_g.1 Os03g0112101_circ_g.1 Os03g0112101_circ_g.2 Os03g0112101_circ_igg.1 Os03g0112101_circ_ig.1 Os03g0112101_circ_ig.3 Os03g0112101_circ_ig.4 Os03g0112101_circ_ig.5 Os03g0112101_circ_ig.6 Os03g0112101_circ_ig.7 Os03g0112101_circ_ig.8 Os03g0112400_circ_g.1 Os03g0112400_circ_igg.1 EPlOSAG00000048437_circ_ig.1 EPlOSAG00000048437_circ_ig.2 Os03g0112600_circ_ig.1 Os03g0112700_circ_g.1 Os03g0112700_circ_g.2 Os03g0112700_circ_g.3 Os03g0112700_circ_g.4 Os03g0112700_circ_g.5 Os03g0112700_circ_g.6 Os03g0112700_circ_g.7 Os03g0112800_circ_g.1 Os03g0112800_circ_g.2 Os03g0113500_circ_g.1 Os03g0113500_circ_g.2 Os03g0113500_circ_g.3 Os03g0113500_circ_g.4 Os03g0113500_circ_g.5 Os03g0113700_circ_g.1 Os03g0113800_circ_g.1 Os03g0113800_circ_g.2 Os03g0113800_circ_g.3 Os03g0113800_circ_g.4 Os03g0113800_circ_g.5 Os03g0113800_circ_g.6 Os03g0113800_circ_g.7 EPlOSAG00000003330_circ_ig.1 Os03g0114000_circ_g.1 Os03g0114300_circ_g.1 Os03g0114300_circ_g.2 Os03g0114300_circ_g.3 Os03g0114300_circ_g.4 Os03g0114300_circ_g.5 Os03g0114300_circ_g.6 Os03g0114300_circ_g.7 Os03g0114300_circ_g.8 Os03g0114300_circ_g.9 Os03g0114300_circ_g.10 Os03g0114300_circ_g.11 Os03g0115100_circ_g.1 Os03g0115400_circ_g.1 Os03g0115400_circ_g.2 Os03g0115400_circ_ig.1 Os03g0115700_circ_g.1 Os03g0116000_circ_g.1 Os03g0116000_circ_g.2 Os03g0116300_circ_g.1 Os03g0116300_circ_g.2 Os03g0116300_circ_g.3 Os03g0116300_circ_g.4 Os03g0116300_circ_g.5 Os03g0116300_circ_g.6 Os03g0116400_circ_g.1 Os03g0116400_circ_g.2 Os03g0116700_circ_g.1 Os03g0116700_circ_g.2 Os03g0116900_circ_igg.1 Os03g0117100_circ_g.1 Os03g0117100_circ_g.2 Os03g0117100_circ_g.3 Os03g0117100_circ_g.4 Os03g0117800_circ_g.1 Os03g0117800_circ_g.2 Os03g0118400_circ_g.1
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACAACCCCCTGATGTGGGACTGCAGCAACAAATCCTGACAATATTCAAGAAgacgagtactgt
cgctattcttctgtcgacttatgccaagatactgatgcaca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 105
Transcript exons: 704372-704476
GACGAGTACTGTCGCTATTCTTCTGTCGACTTATGCCAAGATACTGATGCACACACAACCCCCT
GATGTGGGACTGCAGCAACAAATCCTGACAATATTCAAGAA

Genomic sequence GACGAGTACTGTCGCTATTCTTCTGTCGACTTATGCCAAGATACTGATGCACACACAACCCCCT
GATGTGGGACTGCAGCAACAAATCCTGACAATATTCAAGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.299213571
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015