Detail information of EPlOSAG00000033063_circ_ig.2


General Information
CircRNA Name EPlOSAG00000033063_circ_ig.2
ID in PlantcircBase osa_circ_011499
Alias Os_ciR3698
Organism Oryza sativa
Position chr12: 18343020-18346314  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os12g0489200_circ_igg.1 EPlOSAG00000033063_circ_ig.2 EPlOSAG00000033063_circ_ig.3 Os12g0489200_circ_igg.4 EPlOSAG00000033063_circ_ig.5
Support reads 2/1
Tissues root/shoot, root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGATCCATTTTTGCTGGTTATCCGTGAAGGTGAAACTGCAGCAGAGATATTAGAACGAATTCAG
AAAAAACTTCGAGTTCCTGATGAGGAATTCTCCAAGgaggaagtcgcaaaggaatgtgggatcc
ctgtgcagtttcagcgcttctggctgtgggctaagaggcaaaatcatacataccgaccgaatcg
tccactgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGGAAGTCGCAAAGGAATGTGGGATCCCTGTGCAGTTTCAGCGCTTCTGGCTGTGGGCTAAGA
GGCAAAATCATACATACCGACCGAATCGTCCACTGGGCCCTCATGAAGAATCACAATCAGTGAG
TCATATATTGTTTCCTGAAGTTCAAAATTTTAGTCCTTTGAACTAATTTAAAGAGTTGGGAAAT
ATTCTTTTGTTACTGTTGTAATCACCCTAGCAAACTTTTTTTAGTTCAGCAATGATTTTTTTTC
TTGCTTCATATTTTTCTTTTCATTTTATGGTCGGAAATAACCTCCATATTTACTTGCTACCATT
CTCTTGTATGTGTTATTCTGTTTGTGATTATATCTTATTACTTATATTGCATAGGTGGGGCAAC
TTAGGGAGGTATCTAACAAGGCGCACAATGCTGAGTTGAAGTTGTTTCTGGAAGTAGAGACTGG
AGTGGTAGTAACATTCTACAATAGCTGTTTATTCTTTATATTTCTGTTTCACTATCAATTATCT
TTCAAGATTTTAGAAATTTGACCATGTCTATTTATTATTGTATAGGATCTGCGGCCCATTCGTC
CACCTGAGAAGAGCAAGGAGGATATACTACTTTTCTTTAAACTTTATAACCCTGAAAAGGAAGA
ACTTTGGTATATATTTTCATATCTATTTTGCAAGCATCCTTTAAAAAAAATTAGTACAATTTTA
AAAAATTAGTACAAAGACTCACGTGGTGAAGTCATTTTGTTGTACAGTTTTGTTGGTAGGCTTT
TTGTGAAGGCTACGGGAAAACCATCTGAAATCCTGACAAAATTGAATGAAATGGCTGGATTTGC
TCCAAATGAAGAAATTGAGCTATATGAGGTGAGGGTCATATTCAGTTCTCGATGATTACGTGGT
AATATCATTACATGCTACATAAAACCATCTTACTCTCAGAGCACAGTCGCATGATCTACTCATG
TGCTCCTTTTGCTCTCATAGCTCCAGCCTCCAGTGGTTATAATTCAAGTTTCTTTTTATTGTGT
TGTTAATATAGCATTACTCTGACTTGAAAGTGATGTAGTGATGCTTTTCCCATGATTAACACTC
TGAGCTATTTGGCATTTTTATGCTGCAGGAAATTAAGTTTGAGCCAAATGTGATGTGCGAACAC
ATTGACAAGAAACTAACTTTCCGTTCCAGTCAGGTTTGAAAGAAATCGTCACCTTTTTAGATGC
AAACTTTTTTAGTTTTCTAGCTCAAGATTGTGATGGCTTCTCTAAATTGTCCCATGCTCCATTG
TTCTTTCTAATGCTGCAGCTTGAAGATGGGGACATAATATGTTTCCAAAAGTCACCTGTGTCAG
ATGGGGAGACTCAAGTGCGGTATCCAGACGTTCCTTCATTTTTGGAGTATGTGCATAATAGACA
GGTACACTCAGATACACATCAAGTGTAGCATTTTGAACTTGTTCTTATGTTTTATTAGCTTATG
TGTCCTTTAGTTGTCATTTGATGCGCTGTTTTAGCCCTTTTTTTTTCTAGTCTCTCGTCTACTT
ATTTCGATGTATTCGGTGTTCATGGTAATCTCGTCACGAATTGCTATATATGGATTTGTTCTAC
TATTCTAGCTACATAGAACTGCTATGCTTTTTTCCGTTACTTTTTGTCACAAAAATACATGATT
ATATATGTGCATCTGTGCCTTTCTACATAAAACCCAATCTTGTTTACTTTTTCTGAGCTTTCTA
GTAACTCTTCTTTTGTTTATATTATAGGTGGTGCACTTCCGGTCTTTGGAGAAACCAAAGGAGG
ATGATTTTTGTTTGGAATTGTGAGGGCTTGCAAATCACTATGTTTCTTATTTAAAAAATTAAAC
TATTATTTTGCAAAAAAGCTTACATATCAATATTTCTTGCTTTCACTTAGGTCGAAGCTTCATA
CTTATGATGATGTTGTTGAGAGAGTTGCACGCCAACTTGGCTTGGATGATCCATCAAAAATTCG
CCTTACATCTCACAACTGTTATTCCCAGCAACCTAAACCACAGCCTATCAGATATCGTGGTGTA
GAGCACCTATTGGATATGCTTGTTCATTACAATCAGGTATATTCTTCTTTATTTGCGACATAAG
CACTACATGACCATTGGGCTTATATTTTATTTTCACGCCTGGCTTTTGCAGACTTCTGACATCT
TGTATTACGAGGTTCTGGACATTCCACTGCCAGAATTGCAGTGTTTGAAAACTCTTAAAGTTGC
ATTCCACCATGCAACTAAAGATGAGGTTTGTCTGCCAACATTTTAGTACTTCTTACCTCTGTCT
TTAGTTGCAAGTATATTTCTGATCCACAACATGCCAGGTTGTAATCCATAGCATAAGACTACCG
AAAAACAGCACCATCAGTGATGTGATTACTGACCTAAAAACCAAGGTGATCACTTATCTGTTTT
TCCGGTTTATCCATTCTCTTGCATCGTTTATCCTGAAAACTGATAACTTGGTGCTATCTATTGA
GTTCTCTCTTATCTTGTTACTATAAGCTGTTTTATTTTTCATGAAGAGTGCCTACTATCCTGAT
CCAATCCTGATCTTTTAATGTCAACAGGTTGAACTGTCCAATCCTGATGCTGAACTCCGCTTGC
TTGAAGTATTCTATCACAAGATTTATAAGGTCCTTGGATGTTCTGCTTTGCATTTTGATAGTCT
TTATTTTCTGAAGACCGTTTGGAAATTAGTATTATATTTTCCTTACATTATTAACCCCTTGTTG
TGTAAATAATTTATCTGTAGATATTTCCACCTCACGAGAAAATAGAGAACATAAATGATCAGTA
CTGGACACTACGTGCTGAGGAGGTTCGTTTGAACATCTTTTCTGACTGACGATATTGACATAAT
TCCATTTAGTTAGTATACTACTGTCATTATATTATTGATTTGCATAACATTTTTGCTACCAATT
GAAACAGATACCAGAGGAAGAGAAGAACCTTGGCCCACATGATCGGTTGATTCATGTTTACCAT
TTCATGAAAGATCCTAATCAAAATCAGGTACTGCAATTTCCATATGATTACCTTGATAATTACT
ACTCTAATCTAGTGTAAAATATTGCGTTGGGAAAATTGCTACAGCCTACAGATACAGATGAGCT
CTCATCCATTATCAGTTTTGACATTGCTTTTATGACTAACAGCAGATTCAGAATTTTGGAGATC
CATTTTTGCTGGTTATCCGTGAAGGTGAAACTGCAGCAGAGATATTAGAACGAATTCAGAAAAA
ACTTCGAGTTCCTGATGAGGAATTCTCCAAG
Conservation Information
Conserved circRNAs osi_circ_003442* osi_circ_009735
PMCS 0.254390953
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017