Detail information of Os12g0489200_circ_igg.4


General Information
CircRNA Name Os12g0489200_circ_igg.4
ID in PlantcircBase osa_circ_011503
Alias Os_ciR7351
Organism Oryza sativa
Position chr12: 18345971-18347281  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000033063_circ_ig.2 Os12g0489200_circ_igg.1 EPlOSAG00000033063_circ_ig.2 EPlOSAG00000033063_circ_ig.3 EPlOSAG00000033063_circ_ig.5
Support reads 2
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGATTCTGCAGAGGAGAGATGTTTATGGAGCTTGGGAACAATACCTTGGCTTGGAACATACT
GACACAACACCAAAAAGGTCTTATACAGCCAATCAGataccagaggaagagaagaaccttggcc
cacatgatcggttgattcatgtttaccatttcatgaaagatcctaatcaaaatcaggtactgca
atttccat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATACCAGAGGAAGAGAAGAACCTTGGCCCACATGATCGGTTGATTCATGTTTACCATTTCATGA
AAGATCCTAATCAAAATCAGGTACTGCAATTTCCATATGATTACCTTGATAATTACTACTCTAA
TCTAGTGTAAAATATTGCGTTGGGAAAATTGCTACAGCCTACAGATACAGATGAGCTCTCATCC
ATTATCAGTTTTGACATTGCTTTTATGACTAACAGCAGATTCAGAATTTTGGAGATCCATTTTT
GCTGGTTATCCGTGAAGGTGAAACTGCAGCAGAGATATTAGAACGAATTCAGAAAAAACTTCGA
GTTCCTGATGAGGAATTCTCCAAGGTAACCTTCATTTTTATGTTTCCTAACTGTTCTTTTACTA
TATGTTCTCTCCTGCATGTTCTGTTAGATGGTAGTGGAGGTGGCATATATTTAATCTATCTGTT
GCTCCAATGTTAAAAAAAAAAAGAAATCCTCCACAATATATGTAACACATATTCAAATGTCAAA
ATATGTGACCGCTTTCATATTCAAGTTCCTTAATTATGCTGGAATATTTTTAGTGAGCTGAAGG
GTTAGTACTGGTGTACGATTCCCTGTCAACTGATGTGCCTGGGGTATTTCTTATTTTCTCACAA
TACAGAAATTTATTCTTATCAACAAACGCAAGAAAAAAAAAGAAATGTATTTCTTATTAGATCA
TAAATGAAAATCACGGGTAAAATCATAGAAGAGAAGATTTCCTAGGTTTGTATGCACTACCAAT
TCTTAGGAATACCACAAGAAGGCCTGCTACTTTGATATTTGGATCTAGGATATATTGGCAATTT
AACTAAGGGACAAGGAATGTGAGAGAGAATAGTTCTAATTTGGTAGGCACTGAAATAAAATTAT
AAGACCACTTAAAATAACAGAAATTTGGTAACCCATTCTTGTCCAACTGTAGATGTTAGTACTT
TAACTGCTGTCTTCCATCTGATCATCTTTTCTCTATAATTTTACGGCCAACATGGATCTCTCAT
GCCGGTAATGCTTATTTGAACAGTGGAAGCTTGCATTCATATCTATGAATCGGCCTGAATACCT
CCAGGATGTCGACGTTGTATCTGCACGTTTTCAGGCAAGTTATAATTTTAACATGCTAGGAAGC
TAGGCATGTCCATATGTGTACCTCCTTTTCTTGACCGCTGTTCATGCCATGATGTATCTTCTGA
TTCTGCAGAGGAGAGATGTTTATGGAGCTTGGGAACAATACCTTGGCTTGGAACATACTGACAC
AACACCAAAAAGGTCTTATACAGCCAATCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.14405075
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015