Detail information of Os12g0489200_circ_igg.1


General Information
CircRNA Name Os12g0489200_circ_igg.1
ID in PlantcircBase osa_circ_011500
Alias NA
Organism Oryza sativa
Position chr12: 18343020-18347281  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000033063_circ_ig.2 EPlOSAG00000033063_circ_ig.2 EPlOSAG00000033063_circ_ig.3 Os12g0489200_circ_igg.4 EPlOSAG00000033063_circ_ig.5
Support reads 1
Tissues shoot
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGATTCTGCAGAGGAGAGATGTTTATGGAGCTTGGGAACAATACCTTGGCTTGGAACATACT
GACACAACACCAAAAAGGTCTTATACAGCCAATCAGgaggaagtcgcaaaggaatgtgggatcc
ctgtgcagtttcagcgcttctggctgtgggctaagaggcaaaatcatacataccgaccgaatcg
tccactgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGGAAGTCGCAAAGGAATGTGGGATCCCTGTGCAGTTTCAGCGCTTCTGGCTGTGGGCTAAGA
GGCAAAATCATACATACCGACCGAATCGTCCACTGGGCCCTCATGAAGAATCACAATCAGTGAG
TCATATATTGTTTCCTGAAGTTCAAAATTTTAGTCCTTTGAACTAATTTAAAGAGTTGGGAAAT
ATTCTTTTGTTACTGTTGTAATCACCCTAGCAAACTTTTTTTAGTTCAGCAATGATTTTTTTTC
TTGCTTCATATTTTTCTTTTCATTTTATGGTCGGAAATAACCTCCATATTTACTTGCTACCATT
CTCTTGTATGTGTTATTCTGTTTGTGATTATATCTTATTACTTATATTGCATAGGTGGGGCAAC
TTAGGGAGGTATCTAACAAGGCGCACAATGCTGAGTTGAAGTTGTTTCTGGAAGTAGAGACTGG
AGTGGTAGTAACATTCTACAATAGCTGTTTATTCTTTATATTTCTGTTTCACTATCAATTATCT
TTCAAGATTTTAGAAATTTGACCATGTCTATTTATTATTGTATAGGATCTGCGGCCCATTCGTC
CACCTGAGAAGAGCAAGGAGGATATACTACTTTTCTTTAAACTTTATAACCCTGAAAAGGAAGA
ACTTTGGTATATATTTTCATATCTATTTTGCAAGCATCCTTTAAAAAAAATTAGTACAATTTTA
AAAAATTAGTACAAAGACTCACGTGGTGAAGTCATTTTGTTGTACAGTTTTGTTGGTAGGCTTT
TTGTGAAGGCTACGGGAAAACCATCTGAAATCCTGACAAAATTGAATGAAATGGCTGGATTTGC
TCCAAATGAAGAAATTGAGCTATATGAGGTGAGGGTCATATTCAGTTCTCGATGATTACGTGGT
AATATCATTACATGCTACATAAAACCATCTTACTCTCAGAGCACAGTCGCATGATCTACTCATG
TGCTCCTTTTGCTCTCATAGCTCCAGCCTCCAGTGGTTATAATTCAAGTTTCTTTTTATTGTGT
TGTTAATATAGCATTACTCTGACTTGAAAGTGATGTAGTGATGCTTTTCCCATGATTAACACTC
TGAGCTATTTGGCATTTTTATGCTGCAGGAAATTAAGTTTGAGCCAAATGTGATGTGCGAACAC
ATTGACAAGAAACTAACTTTCCGTTCCAGTCAGGTTTGAAAGAAATCGTCACCTTTTTAGATGC
AAACTTTTTTAGTTTTCTAGCTCAAGATTGTGATGGCTTCTCTAAATTGTCCCATGCTCCATTG
TTCTTTCTAATGCTGCAGCTTGAAGATGGGGACATAATATGTTTCCAAAAGTCACCTGTGTCAG
ATGGGGAGACTCAAGTGCGGTATCCAGACGTTCCTTCATTTTTGGAGTATGTGCATAATAGACA
GGTACACTCAGATACACATCAAGTGTAGCATTTTGAACTTGTTCTTATGTTTTATTAGCTTATG
TGTCCTTTAGTTGTCATTTGATGCGCTGTTTTAGCCCTTTTTTTTTCTAGTCTCTCGTCTACTT
ATTTCGATGTATTCGGTGTTCATGGTAATCTCGTCACGAATTGCTATATATGGATTTGTTCTAC
TATTCTAGCTACATAGAACTGCTATGCTTTTTTCCGTTACTTTTTGTCACAAAAATACATGATT
ATATATGTGCATCTGTGCCTTTCTACATAAAACCCAATCTTGTTTACTTTTTCTGAGCTTTCTA
GTAACTCTTCTTTTGTTTATATTATAGGTGGTGCACTTCCGGTCTTTGGAGAAACCAAAGGAGG
ATGATTTTTGTTTGGAATTGTGAGGGCTTGCAAATCACTATGTTTCTTATTTAAAAAATTAAAC
TATTATTTTGCAAAAAAGCTTACATATCAATATTTCTTGCTTTCACTTAGGTCGAAGCTTCATA
CTTATGATGATGTTGTTGAGAGAGTTGCACGCCAACTTGGCTTGGATGATCCATCAAAAATTCG
CCTTACATCTCACAACTGTTATTCCCAGCAACCTAAACCACAGCCTATCAGATATCGTGGTGTA
GAGCACCTATTGGATATGCTTGTTCATTACAATCAGGTATATTCTTCTTTATTTGCGACATAAG
CACTACATGACCATTGGGCTTATATTTTATTTTCACGCCTGGCTTTTGCAGACTTCTGACATCT
TGTATTACGAGGTTCTGGACATTCCACTGCCAGAATTGCAGTGTTTGAAAACTCTTAAAGTTGC
ATTCCACCATGCAACTAAAGATGAGGTTTGTCTGCCAACATTTTAGTACTTCTTACCTCTGTCT
TTAGTTGCAAGTATATTTCTGATCCACAACATGCCAGGTTGTAATCCATAGCATAAGACTACCG
AAAAACAGCACCATCAGTGATGTGATTACTGACCTAAAAACCAAGGTGATCACTTATCTGTTTT
TCCGGTTTATCCATTCTCTTGCATCGTTTATCCTGAAAACTGATAACTTGGTGCTATCTATTGA
GTTCTCTCTTATCTTGTTACTATAAGCTGTTTTATTTTTCATGAAGAGTGCCTACTATCCTGAT
CCAATCCTGATCTTTTAATGTCAACAGGTTGAACTGTCCAATCCTGATGCTGAACTCCGCTTGC
TTGAAGTATTCTATCACAAGATTTATAAGGTCCTTGGATGTTCTGCTTTGCATTTTGATAGTCT
TTATTTTCTGAAGACCGTTTGGAAATTAGTATTATATTTTCCTTACATTATTAACCCCTTGTTG
TGTAAATAATTTATCTGTAGATATTTCCACCTCACGAGAAAATAGAGAACATAAATGATCAGTA
CTGGACACTACGTGCTGAGGAGGTTCGTTTGAACATCTTTTCTGACTGACGATATTGACATAAT
TCCATTTAGTTAGTATACTACTGTCATTATATTATTGATTTGCATAACATTTTTGCTACCAATT
GAAACAGATACCAGAGGAAGAGAAGAACCTTGGCCCACATGATCGGTTGATTCATGTTTACCAT
TTCATGAAAGATCCTAATCAAAATCAGGTACTGCAATTTCCATATGATTACCTTGATAATTACT
ACTCTAATCTAGTGTAAAATATTGCGTTGGGAAAATTGCTACAGCCTACAGATACAGATGAGCT
CTCATCCATTATCAGTTTTGACATTGCTTTTATGACTAACAGCAGATTCAGAATTTTGGAGATC
CATTTTTGCTGGTTATCCGTGAAGGTGAAACTGCAGCAGAGATATTAGAACGAATTCAGAAAAA
ACTTCGAGTTCCTGATGAGGAATTCTCCAAGGTAACCTTCATTTTTATGTTTCCTAACTGTTCT
TTTACTATATGTTCTCTCCTGCATGTTCTGTTAGATGGTAGTGGAGGTGGCATATATTTAATCT
ATCTGTTGCTCCAATGTTAAAAAAAAAAAGAAATCCTCCACAATATATGTAACACATATTCAAA
TGTCAAAATATGTGACCGCTTTCATATTCAAGTTCCTTAATTATGCTGGAATATTTTTAGTGAG
CTGAAGGGTTAGTACTGGTGTACGATTCCCTGTCAACTGATGTGCCTGGGGTATTTCTTATTTT
CTCACAATACAGAAATTTATTCTTATCAACAAACGCAAGAAAAAAAAAGAAATGTATTTCTTAT
TAGATCATAAATGAAAATCACGGGTAAAATCATAGAAGAGAAGATTTCCTAGGTTTGTATGCAC
TACCAATTCTTAGGAATACCACAAGAAGGCCTGCTACTTTGATATTTGGATCTAGGATATATTG
GCAATTTAACTAAGGGACAAGGAATGTGAGAGAGAATAGTTCTAATTTGGTAGGCACTGAAATA
AAATTATAAGACCACTTAAAATAACAGAAATTTGGTAACCCATTCTTGTCCAACTGTAGATGTT
AGTACTTTAACTGCTGTCTTCCATCTGATCATCTTTTCTCTATAATTTTACGGCCAACATGGAT
CTCTCATGCCGGTAATGCTTATTTGAACAGTGGAAGCTTGCATTCATATCTATGAATCGGCCTG
AATACCTCCAGGATGTCGACGTTGTATCTGCACGTTTTCAGGCAAGTTATAATTTTAACATGCT
AGGAAGCTAGGCATGTCCATATGTGTACCTCCTTTTCTTGACCGCTGTTCATGCCATGATGTAT
CTTCTGATTCTGCAGAGGAGAGATGTTTATGGAGCTTGGGAACAATACCTTGGCTTGGAACATA
CTGACACAACACCAAAAAGGTCTTATACAGCCAATCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.237320474
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017