Detail information of EPlOSAG00000033063_circ_ig.3


General Information
CircRNA Name EPlOSAG00000033063_circ_ig.3
ID in PlantcircBase osa_circ_011502
Alias NA
Organism Oryza sativa
Position chr12: 18344429-18344750  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000033063_circ_ig.2 Os12g0489200_circ_igg.1 EPlOSAG00000033063_circ_ig.2 Os12g0489200_circ_igg.4 EPlOSAG00000033063_circ_ig.5
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   AC-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCGTTACTTTTTGTCACAAAAATACATGATTATATATGTGCATCTGTGCCTTTCTACATAAA
ACCCAATCTTGTTTACTTTTTCTGAGCTTTCTAGTAgtacactcagatacacatcaagtgtagc
attttgaacttgttcttatgttttattagcttatgtgtcctttagttgtcatttgatgcgctgt
tttagccc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTACACTCAGATACACATCAAGTGTAGCATTTTGAACTTGTTCTTATGTTTTATTAGCTTATGT
GTCCTTTAGTTGTCATTTGATGCGCTGTTTTAGCCCTTTTTTTTTCTAGTCTCTCGTCTACTTA
TTTCGATGTATTCGGTGTTCATGGTAATCTCGTCACGAATTGCTATATATGGATTTGTTCTACT
ATTCTAGCTACATAGAACTGCTATGCTTTTTTCCGTTACTTTTTGTCACAAAAATACATGATTA
TATATGTGCATCTGTGCCTTTCTACATAAAACCCAATCTTGTTTACTTTTTCTGAGCTTTCTAG
TA
Conservation Information
Conserved circRNAs NA
PMCS 0.138974689
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017