Detail information of BGIOSGA037410_circ_g.8


General Information
CircRNA Name BGIOSGA037410_circ_g.8
ID in PlantcircBase osi_circ_003442
Alias 12:14716613|14719907
Organism Oryza sativa ssp. indica
Position chr12: 14716613-14719907  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA037410
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA037410_circ_g.1 BGIOSGA037410_circ_g.2 BGIOSGA037410_circ_g.3 BGIOSGA037410_circ_g.4 BGIOSGA037410_circ_g.5 BGIOSGA037410_circ_g.6 BGIOSGA037410_circ_g.7 BGIOSGA037410_circ_g.9
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA037410-TA:14
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGATCCATTTTTGCTGGTTATCCGTGAAGGTGAAACTGCAGCAGAGATATTAGAACGAATTCAG
AAAAAACTTCGAGTTCCTGATGAGGAATTCTCCAAGgaggaagtcgcaaaggaatgtgggatcc
ctgtgcagtttcagcgcttctggctgtgggctaagaggcaaaatcatacataccgaccgaatcg
tccactgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGGAAGTCGCAAAGGAATGTGGGATCCCTGTGCAGTTTCAGCGCTTCTGGCTGTGGGCTAAGA
GGCAAAATCATACATACCGACCGAATCGTCCACTGGGCCCTCATGAAGAATCACAATCAGTGAG
TCATATATTGTTTCCTGAAGTTCAAAATTTTAGTCCTTTGAACTAATTTAAAGAGTTGGGAAAT
ATTCTTTTGTTACTGTTGTAATCACCCTAGCAAACTTTTTTTAGTTCAGCAATGATTTTTTTTC
TTGCTTCATATTTTTCTTTTCATTTTATGGTCGGAAATAACCTCCATATTTACTTGCTACCATT
CTCTTGTATGTGTTATTCTGTTTGTGATTATATCTTATTACTTATATTGCATAGGTGGGGCAAC
TTAGGGAGGTCTCTAACAAGGCGCACAATGCTGAGTTGAAGTTGTTTCTGGAAGTAGAGACTGG
AGTGGTAGTAACATTCTACAATAGCTGTTTATTCTTTATATTTCTGCTTCACTATCAATTATCT
TTCAAGATTTTAGAAATTTGACCATGTCTATTTATTATTGTATAGGATCTGCGGCCCATTCGTC
CACCTGAGAAGAGCAAGGAGGATATACTACTTTTCTTTAAACTTTATAACCCTGAAAAGGAAGA
ACTTTGGTATATATTTTCATATCTATTTTGCAAGCATCCTTTAAAAAAAATTAGTACAATTTTA
AAAAATTAGTACAAAGACTCACGTGGTGAAGTCATTTTGTTGTACAGTTTTGTTGGTAGGCTTT
TTGTGAAGGCTACGGGAAAACCATCTGAAATCCTGACAAAATTGAATGAAATGGCTGGATTTGC
TCCAAATGAAGAAATTGAGCTATATGAGGTGAGGGTCATATTCAGTTCTCGATGATTACGTGGT
AATATCATTACATGCTACATAAAACCATCTTACTCTCAGAGCACAGTCGCATGATCTACTCATG
TGCTCCTTTTGCTCTCATAGCTCCAGCCTCCAGTGGTTATAATTCAAGTTTCTTTTTATTGTGT
TGTTAATATAGCATTACTCTGACTTGAAAGTGATGTAGTGATGCTTTTCCCATGATTAACACTC
TGAGCTATTTGGCATTTTTATGCTGCAGGAAATTAAGTTTGAGCCAAATGTGATGTGCGAACAC
ATTGACAAGAAACTAACTTTCCGTTCCAGTCAGGTTTGAAAGAAATCGTCACCTTTTTAGATGC
AAACTTTTTTAGTTTTCTAGTTCAAGATTGTGATGGCTTCTCTAAATTGTCCCATGCTCCATTG
TTCTTTCTAATGCTGCAGCTTGAAGATGGGGACATAATATGTTTCCAAAAGTCACCTGTGTTAG
ATGGGGAGACTCAAGTGCGGTATCCAGACGTTCCTTCATTTTTGGAGTATGTGCATAATAGACA
GGTACACTCAGATACACATCAAGTGTAGCATTTTGAACTTGTTCTTATGTTTTATTAACTTATG
TGTCCTTTAGTTGTCATTTGATGCGCTGTTTTAGCCCTTTTTTTTTCTAGTCTCTCGTCTACTT
ATTTCGATGTATTCGGTGTTCATGGTAATCTCGTCACGAATTGCTATATATGGATTTGTTCTAC
TATTCTAGCTACATAGAACTGCTATGCTTTTTTCCGTTACTTTTTGTCACAAAAATACATGATT
ATATATGTGCATCTGTGCCTTTCTACATAAAACCCAATCTTGTTTACTTTTTCTGAGCTTTCTA
GTAACTCTTCTTTTGTTTATATTATAGGTGGTGCACTTCCGGTCTTTGGAGAAACCAAAGGAGG
ATGATTTTTGTTTGGAATTGTGAGGGCTTGCAAATCACTATGTTTCTTATTTTAAAAATTAAAC
TATTATTTTGCAAAAAAGCTTACATATCAATATTTCTTGCTTTCACTTAGGTCGAAGCTTCATA
CTTATGATGATGTTGTTGAGAGAGTTGCACGCCAACTTGGCTTGGATGATCCATCAAAAATTCG
CCTTACATCTCACAACTGTTATTCCCAGCAACCTAAACCACAGCCTATCAGATATCGTGGTGTA
GAGCACCTATTGGATATGCTTGTTCATTACAATCAGGTATATTCTTCTTTATTTGCGACATAAG
CACTACATGACCATTGGGCTTATATTTTATTTTCACGCCTGGCTTTTGCAGACTTCTGACATCT
TGTATTACGAGGTTCTGGACATTCCACTGCCAGAATTGCAGTGTTTGAAAACTCTTAAAGTTGC
ATTCCACCATGCAACTAAAGATGAGGTTTGTCTGCCAACATTTTAGTACTTCTTACCTCTGTCT
TTAGTTGCAAGTATATTTCTGATCCACAACATGCCAGGTTGTAATCCATAGCATAAGACTACCG
AAAAACAGCACCATCAGTGATGTGATTACTGACCTAAAAACCAAGGTGATCACTTATCTGTTTT
TCTGGTTTATCCATTCTCTTGCATCGTTTATCCTGAAAACTGATAACTTGGTGCTATCTATTGA
GTTCTCTCTTATCTTGTTACTATAAGCTGTTTTATTTTTCATGAAGAGTGCCTACTATCCTGAT
CCAATCCTGATCTTTTAATGTCAACAGGTTGAACTGTCCAATCCTGATGCTGAACTCCGCTTGC
TTGAAGTATTCTACCACAAGATTTATAAGGTCCTTGGATGTTCTGCTTTGCATTTTGATAGTCT
TTATTTTCTGAAGACCGTTTGGAAATTAGTATTATATTTTCCTTACATTATTAACCCCTTGTTG
TGTAAATAATTTATCTGTAGATATTTCCACCTCACGAGAAAATAGAGAACATAAATGATCAGTA
CTGGACACTACGTGCTGAGGAGGTTCGTTTGAACATCTTTTCTGACTGAAGATATTGACATAAT
TCCATTTAGTTAGTATACTACTGTCATTATATTATTGATTTGCATAACATTTTTGCTACCAATT
GAAACAGATACCAGAGGAAGAGAAGAACCTTGGCCCGCATGATCGGTTGATTCATGTTTACCAT
TTCATGAAAGATCCTAATCAAAATCAGGTACTGCAATTTCCATATGATTACCTTGATAATTACT
ACTCTAATCTAGTGTAAAATATTGCGTTGGGAAAATTGCTACAGCCTACAGATACAGATGAGCT
CTCATCCATTATCAGTTTTGACATTGCTTTTATGACTAACAGCAGATTCAGAATTTTGGAGATC
CATTTTTGCTGGTTATCCGTGAAGGTGAAACTGCAGCAGAGATATTAGAACGAATTCAGAAAAA
ACTTCGAGTTCCTGATGAGGAATTCTCCAAG
Conservation Information
Conserved circRNAs osa_circ_011499*
PMCS
Functional Information
Coding potential Y
Potential coding position 14716722-14719859(-)
14717432-14719904(+)
14719892-14717032(+)
Potential amino acid sequence MRAQWTIRSVCMILPLSPQPEALKLHRDPTFLCDFLLGEFLIRNSKFFLNSF*(-)
MAGFAPNEEIELYEEIKFEPNVMCEHIDKKLTFRSSQLEDGDIICFQKSPVLDGETQVRYPDVP
SFLEYVHNRQVVHFRSLEKPKEDDFCLELSKLHTYDDVVERVARQLGLDDPSKIRLTSHNCYSQ
QPKPQPIRYRGVEHLLDMLVHYNQTSDILYYEVLDIPLPELQCLKTLKVAFHHATKDEVVIHSI
RLPKNSTISDVITDLKTKVELSNPDAELRLLEVFYHKIYKIFPPHEKIENINDQYWTLRAEEIP
EEEKNLGPHDRLIHVYHFMKDPNQNQQIQNFGDPFLLVIREGETAAEILERIQKKLRVPDEEFS
KEEVAKECGIPVQFQRFWLWAKRQNHTYRPNRPLGPHEESQSVGQLREVSNKAHNAELKLFLEV
ETGVDLRPIRPPEKSKEDILLFFKLYNPEKEELCFVGRLFVKATGKPSEILTKLNEMAGFAPNE
EIELYEEIKFEPNVMCEHIDKKLTFRSSQLEDGDIICFQKSPVLDGETQVRYPDVPSFLEYVHN
RQVVHFRSLEKPKEDDFCLELSKLHTYDDVVERVARQLGLDDPSKIRLTSHNCYSQQPKPQPIR
YRGVEHLLDMLVHYNQTSDILYYEVLDIPLPELQCLKTLKVAFHHATKDEVVIHSIRLPKNSTI
SDVITDLKTKVELSNPDAELRLLEVFYHKIYKIFPPHEKIENINDQYWTLRAEEIPEEEKNLGP
HDRLIHVYHFMKDPNQNQQIQNFGDPFLLVIREGETAAEILERIQKKLRVPDEEFSKEEVAKEC
GIPVQFQRFWLWAKRQNHTYRPNRPLGPHEESQSVGQLREVSNKAHNAELKLFLEVETGVDLRP
IRPPEKSKEDILLFFKLYNPEKEELCFVGRLFVKATGKPSEILTKLNEMAGFAPNEEIELYEEI
KFEPNVMCEHIDKKLTFRSSQLEDGDIICFQKSPVLDGETQVRYPDVPSFLEYVHNRQVVHFRS
LEKPKEDDFCLELSKLHTYDDVVERVARQLGLDDPSKIRLTSHNCYSQQPKPQPIRYRGVEHLL
DMLVHYNQTSDILYYEVLDIPLPELQCLKTLKVAFHHATKDEVVIHSIRLPKNSTISDVITDLK
TKVELSNPDAELRLLEVFYHKIYKIFPPHEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVY
HFMKDPNQNQQIQNFGDPFLLVIREGETAAEILERIQKKLRVPDEEFSKEEVAKECGIPVQFQR
FWLWAKRQNHTYRPNRPLGPHEESQSVGQLREVSNKAHNAELKLFLEVETGVDLRPIRPPEKSK
EDILLFFKLYNPEKEELCFVGRLFVKATGKPSEILTKLNEMAGFAPNEEIELYEEIKFEPNVMC
EHIDKKLTFRSSQLEDGDIICFQKSPVLDGETQVRYPDVPSFLEYVHNRQVVHFRSLEKPKEDD
FCLELSKLHTYDDVVERVARQLGLDDPSKIRLTSHNCYSQQPKPQPIRYRGVEHLLDMLVHYNQ
TSDILYYEVLDIPLPELQCLKTLKVAFHHATKDEVVIHSIRLPKNSTISDVITDLKTKVELSNP
DAELRLLEVFYHKIYKIFPPHEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFMKDPNQ
NQQIQNFGDPFLLVIREGETAAEILERIQKKLRVPDEEFSK(+)
MRNSPRRKSQRNVGSLCSFSASGCGLRGKIIHTDRIVHWALMKNHNQWGNLGRSLTRRTMLS*(
+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021