Plant Circular RNA Database

Detail information of Os02g0452500_circ_g.16

			
						 General Information
					
						CircRNA Name
						Os02g0452500_circ_g.16
					
						ID in PlantcircBase
						osa_circ_014585
					
						Alias
						Os02circ12314/Os_ciR87
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 14950803-14956208  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, find_circ
					
						Parent gene
						
							Os02g0452500						
					
						Parent gene annotation
						
							Similar to SNARE-interacting protein KEULE. (Os02t0452500-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0452500_circ_g.1 Os02g0452500_circ_g.2 Os02g0452500_circ_g.3 Os02g0452500_circ_g.4 Os02g0452500_circ_g.5 Os02g0452500_circ_g.6 Os02g0452500_circ_g.7 Os02g0452500_circ_g.8 Os02g0452500_circ_g.9 Os02g0452500_circ_g.10 Os02g0452500_circ_g.11 Os02g0452500_circ_g.12 Os02g0452500_circ_g.13 Os02g0452500_circ_g.14 Os02g0452500_circ_g.15 Os02g0452500_circ_g.17 Os02g0452500_circ_g.18 Os02g0452500_circ_g.19 Os02g0452500_circ_g.20 Os02g0452500_circ_g.21 Os02g0452500_circ_g.22 Os02g0452500_circ_g.23 Os02g0452500_circ_g.24 Os02g0452500_circ_g.25 Os02g0452500_circ_g.26 						
					
						Support reads
						84/595/29
					
						Tissues
						leaf and panicle/root/shoot, root, anther, seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0452500-01:7

General Information
CircRNA Name	Os02g0452500_circ_g.16
ID in PlantcircBase	osa_circ_014585
Alias	Os02circ12314/Os_ciR87
Organism	Oryza sativa
Position	chr2: 14950803-14956208 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, find_circ
Parent gene	Os02g0452500
Parent gene annotation	Similar to SNARE-interacting protein KEULE. (Os02t0452500-01)
Parent gene strand	-
Alternative splicing	Os02g0452500_circ_g.1 Os02g0452500_circ_g.2 Os02g0452500_circ_g.3 Os02g0452500_circ_g.4 Os02g0452500_circ_g.5 Os02g0452500_circ_g.6 Os02g0452500_circ_g.7 Os02g0452500_circ_g.8 Os02g0452500_circ_g.9 Os02g0452500_circ_g.10 Os02g0452500_circ_g.11 Os02g0452500_circ_g.12 Os02g0452500_circ_g.13 Os02g0452500_circ_g.14 Os02g0452500_circ_g.15 Os02g0452500_circ_g.17 Os02g0452500_circ_g.18 Os02g0452500_circ_g.19 Os02g0452500_circ_g.20 Os02g0452500_circ_g.21 Os02g0452500_circ_g.22 Os02g0452500_circ_g.23 Os02g0452500_circ_g.24 Os02g0452500_circ_g.25 Os02g0452500_circ_g.26
Support reads	84/595/29
Tissues	leaf and panicle/root/shoot, root, anther, seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0452500-01:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							Yes							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							F: GCGATGTGCCATGATCTTCT
 R: TGCGAGTAGCCATTGTGTTC
PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	Yes Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	F: GCGATGTGCCATGATCTTCT R: TGCGAGTAGCCATTGTGTTC PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							TGTACATAAGAGGAGATTCAAGTGGCGGTTTATGTTAATTCAGACATACTTCTTGTATAACGGA
TTTCTTCCGGACATGTCATTCAGGAACATCCCAATGctcaacatgaagagaaagcttctcaatt
tgatcgctgtactgtggaagagcttgaaccattttttgcaaatctctattggatatctctcccc
cagttctg

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 1059
Transcript exons: 14950803-14950899,14951783-14951856,14951932-14952030,14
952128-14952211,14952317-14952508,14954409-14954537,1495
5825-14956208
CTCAACATGAAGAGAAAGCTTCTCAATTTGATCGCTGTACTGTGGAAGAGCTTGAACCATTTTT
TGCAAATCTCTATTGGATATCTCTCCCCCAGTTCTTGCTTGCTGCAGTTGAGCAGCTTTATTCT
TGGACACAAAATTGCTCATCTTGTCATGCAGTCTTTCGCTTGCATCTGCTATGTGGGCATGCCG
GAGCTCAACCCATATTGGATCATGATCCTCCAATAGGACATCCTTCTTTTCAGTTGATGAACCA
TTTTTACTCGGAACCTCATGGACATACTTGTTGCCATCCATACATAGAAGATCATGGCACATCG
CGTCATATGTCCATTCATGAATGATTGGTGCAATCTGGTCTACTGAACGATCAACTATAAGTAG
CTCACATGTCTCAGTTTGAGGATAATCCGGTATTGATGTTTTCAATTTTGAAAGGCAATTCCAA
ACAGCAGCAGCAAGTTTTGTAGGCACTAAATCTCGTAGTGTTGTCGTTACAGAAGCATCAATTG
TCTTGGCGACACGGTAGTGCACTCTAGGGAATTCCCTCATTGATGCAAACACTGTAGATATGCG
AGTAGCCATTGTGTTCAAACAAGCATTGTACTTGTGTGAATCCAAAGCATTTTCACTAAAAAGC
TCCTCCAATGCTCTTTCATGGTCAGTGGTGAAACCCTGGGAATCAATAGCAAAGTACTCCAAAT
TCATCTGGAATACAACGAAAAATAAAATGTGAATAAATAGTTAGCATAACAGTCTTTTATATTT
AAAACATTCTGGAATAAAATATAAGAGGATAGCATAATCCAAGTAACCTCACTAAGTGCACCAA
TACGGGGTAGTACACTTGAATCTTTTTTTATTTGAGTAACTAATTCTTTCTGTATGGGAGAACT
GAAAAACACATACGCCCTACAACATGATCAACAATCTATCAGTGAAAGAAACAGAATAGAGATT
GTACATAAGAGGAGATTCAAGTGGCGGTTTATGTTAATTCAGACATACTTCTTGTATAACGGAT
TTCTTCCGGACATGTCATTCAGGAACATCCCAATG
						
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	TGTACATAAGAGGAGATTCAAGTGGCGGTTTATGTTAATTCAGACATACTTCTTGTATAACGGA TTTCTTCCGGACATGTCATTCAGGAACATCCCAATGctcaacatgaagagaaagcttctcaatt tgatcgctgtactgtggaagagcttgaaccattttttgcaaatctctattggatatctctcccc cagttctg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1059 Transcript exons: 14950803-14950899,14951783-14951856,14951932-14952030,14 952128-14952211,14952317-14952508,14954409-14954537,1495 5825-14956208 CTCAACATGAAGAGAAAGCTTCTCAATTTGATCGCTGTACTGTGGAAGAGCTTGAACCATTTTT TGCAAATCTCTATTGGATATCTCTCCCCCAGTTCTTGCTTGCTGCAGTTGAGCAGCTTTATTCT TGGACACAAAATTGCTCATCTTGTCATGCAGTCTTTCGCTTGCATCTGCTATGTGGGCATGCCG GAGCTCAACCCATATTGGATCATGATCCTCCAATAGGACATCCTTCTTTTCAGTTGATGAACCA TTTTTACTCGGAACCTCATGGACATACTTGTTGCCATCCATACATAGAAGATCATGGCACATCG CGTCATATGTCCATTCATGAATGATTGGTGCAATCTGGTCTACTGAACGATCAACTATAAGTAG CTCACATGTCTCAGTTTGAGGATAATCCGGTATTGATGTTTTCAATTTTGAAAGGCAATTCCAA ACAGCAGCAGCAAGTTTTGTAGGCACTAAATCTCGTAGTGTTGTCGTTACAGAAGCATCAATTG TCTTGGCGACACGGTAGTGCACTCTAGGGAATTCCCTCATTGATGCAAACACTGTAGATATGCG AGTAGCCATTGTGTTCAAACAAGCATTGTACTTGTGTGAATCCAAAGCATTTTCACTAAAAAGC TCCTCCAATGCTCTTTCATGGTCAGTGGTGAAACCCTGGGAATCAATAGCAAAGTACTCCAAAT TCATCTGGAATACAACGAAAAATAAAATGTGAATAAATAGTTAGCATAACAGTCTTTTATATTT AAAACATTCTGGAATAAAATATAAGAGGATAGCATAATCCAAGTAACCTCACTAAGTGCACCAA TACGGGGTAGTACACTTGAATCTTTTTTTATTTGAGTAACTAATTCTTTCTGTATGGGAGAACT GAAAAACACATACGCCCTACAACATGATCAACAATCTATCAGTGAAAGAAACAGAATAGAGATT GTACATAAGAGGAGATTCAAGTGGCGGTTTATGTTAATTCAGACATACTTCTTGTATAACGGAT TTCTTCCGGACATGTCATTCAGGAACATCCCAATG
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_003897* osi_circ_011663 						
					
						PMCS
						0.440792094

Conservation Information
Conserved circRNAs	osi_circ_003897* osi_circ_011663
PMCS	0.440792094

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							14956036-14951985(+)
14955859-14956190(-)
14950812-14956150(-)
						
						Potential amino acid sequence
						
							MGELKNTYALQHDQQSISERNRIEIVHKRRFKWRFMLIQTYFLYNGFLPDMSFRNIPMLNMKRK
LLNLIAVLWKSLNHFLQISIGYLSPSSCLLQLSSFILGHKIAHLVMQSFACICYVGMPELNPYW
IMILQ*(+)
MNLEYFAIDSQGFTTDHERALEELFSENALDSHKYNACLNTMATRISTVFASMREFPRVHYRVA
KTIDASVTTTLRDLVPTKLAAAVWNCLSKLKTSIPDYPQTETCELLIVDRSVDQIAPIIHEWTY
DAMCHDLLCMDGNKYVHEVPSKNGSSTEKKDVLLEDHDPIWVELRHAHIADASERLHDKMSNFV
SKNKAAQLQQARTGGEISNRDLQKMVQALPQYSDQIEKLSLHVEHWDVPE*(-)
MLSIGMFLNDMSGRNPLYKKYV*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	14956036-14951985(+) 14955859-14956190(-) 14950812-14956150(-)
Potential amino acid sequence	MGELKNTYALQHDQQSISERNRIEIVHKRRFKWRFMLIQTYFLYNGFLPDMSFRNIPMLNMKRK LLNLIAVLWKSLNHFLQISIGYLSPSSCLLQLSSFILGHKIAHLVMQSFACICYVGMPELNPYW IMILQ(+) MNLEYFAIDSQGFTTDHERALEELFSENALDSHKYNACLNTMATRISTVFASMREFPRVHYRVA KTIDASVTTTLRDLVPTKLAAAVWNCLSKLKTSIPDYPQTETCELLIVDRSVDQIAPIIHEWTY DAMCHDLLCMDGNKYVHEVPSKNGSSTEKKDVLLEDHDPIWVELRHAHIADASERLHDKMSNFV SKNKAAQLQQARTGGEISNRDLQKMVQALPQYSDQIEKLSLHVEHWDVPE(-) MLSIGMFLNDMSGRNPLYKKYV*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os02g0452500_circ_g.16

Address

Any questions?

Supported by