Detail information of Os02g0452500_circ_g.10


General Information
CircRNA Name Os02g0452500_circ_g.10
ID in PlantcircBase osa_circ_014579
Alias NA
Organism Oryza sativa
Position chr2: 14946623-14950899  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer, PcircRNA_finder, circRNA_finder, find_circ
Parent gene Os02g0452500
Parent gene annotation Similar to SNARE-interacting protein KEULE. (Os02t0452500-01)
Parent gene strand -
Alternative splicing Os02g0452500_circ_g.1 Os02g0452500_circ_g.2 Os02g0452500_circ_g.3 Os02g0452500_circ_g.4 Os02g0452500_circ_g.5 Os02g0452500_circ_g.6 Os02g0452500_circ_g.7 Os02g0452500_circ_g.8 Os02g0452500_circ_g.9 Os02g0452500_circ_g.11 Os02g0452500_circ_g.12 Os02g0452500_circ_g.13 Os02g0452500_circ_g.14 Os02g0452500_circ_g.15 Os02g0452500_circ_g.16 Os02g0452500_circ_g.17 Os02g0452500_circ_g.18 Os02g0452500_circ_g.19 Os02g0452500_circ_g.20 Os02g0452500_circ_g.21 Os02g0452500_circ_g.22 Os02g0452500_circ_g.23 Os02g0452500_circ_g.24 Os02g0452500_circ_g.25 Os02g0452500_circ_g.26
Support reads 5
Tissues root, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0452500-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACCTCAACATGAAGAGAAAGCTTCTCAATTTGATCGCTGTACTGTGGAAGAGCTTGAACCATT
TTTTGCAAATCTCTATTGGATATCTCTCCCCCAGTTctgcatcaatttttcacccttgtcactt
tcgaacttgtctgggttgattgctgcatagatcatcagcaaacgcaacttgttttcacgactta
caccctgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCATCAATTTTTCACCCTTGTCACTTTCGAACTTGTCTGGGTTGATTGCTGCATAGATCATC
AGCAAACGCAACTTGTTTTCACGACTTACACCCTGCATTAAGTAGAGTAAACAATGTCATTATT
AAGTCAGTAATATCAAAACACAATGTTGAAGAACAACCAATGTCATTCTAAAAAGTAATTCAAA
TATTAAATACCAATTGTGTCCTCAAAAAATTGATTAATTCTTTAGTTCCAGCATCACCAAATAC
AAGATCTTGCTCTAGCTGTCCAACATCTCGAAGACCTTGCTCCCTTATTATGCTATTGAGTTTA
CCTGCAATCTGTACAAAACTGAGTAATACAAATAGAATGTCCAACTATTTGATTTATGCTTCAC
ATAGTAAACAAAAATAGAATACTCATGATATGTGAGGCAATTAATAATTAAAAAAAATAGCTCA
AAAGCAATTCAGTCAATCACAGAATAAACACAGCAGCTTATTTAAAGTTTTTAATAGCTTGGAG
CAAGCAAAAATATATAGGTACCATCCTTCTGGCCATGCCATTGTGGCTCACATTGCAAGCACCA
CAGATAATACTGCTGTGCCAGAACTGTTGCACCAGCAACAGTTGTTTGCACGCCAGCCACAGTC
AACCCATTGCAATGGTATGCCTGTGGATGTGTCCCGCGAGATAATATGGTAAATATGGTAACAG
CTTGCGTTTAGTAACAGTCATGCCATCACAGTTGTTACTGTGTACTACATCCTAAATAATGTGT
TTCGCAAGGGGCCTCATCTTTTCGCTTATGCTCATCAGCTAAAATTTGAATTTTCAACCTTAAA
TTTGAAGCTGATTTTGAGGTTTTTTCGTCGAAGTTTATTTTTCAGCCTCTCGCTAAGAACACGT
ATATAAAATTTTTATTCACAAATTACTTTTCGTTTGCAAATATGCCGTGAAACAATGGCTCCGA
AGATGTTTTACAGCACAGAAATAGTCGTGTTACAGATTCATAACAGCATTGCATTGCCTCTACA
CATGGTAGAGGGGTGAGAAAACCTAGGGAATCAGCACATAGGATGACCTAAGGTGGATTGTGAA
GAGTTTACTTTAACTGAGGTGGGTCCATGGGAGGTGGGTTAGGGCACACTCGGGAGGGAGGTGG
GGTGTAGTGCTTTTCTTTTCTTTTCTTTTTCTTTTTTGGGTGATCATATTAATAATTTTATTGT
CTAAAACCAATTTGAAAACCTTATAAAACAAATAGACACTTAAGGCAGGGAAATTAAAAAATAC
CATAAAAAACTATCTGATGTATGACCCTCTTTATTTTGTTATTTAATCATTTTGACTCATGCAA
ATATCTACCTTCCAGTAAATCTTTTAAACTTTTAGGAAGACATCTCTAATCTACACCCCTCCTA
TAGAATAACTATTCTACACCCCCCACCCCCTCCCCTTCCCACTCAGCCCGCACCTCCCTTCCGT
TCTCCCGCGCGCCCACACTTCCTCCACGCTCCACCCCCCCCCCCCCTTCCCCCTCTCGCTCCCT
CCTCCCGACGGCCCCCTCCTCACCCTCCGGTTTTTCTCCTCCCTCCCTCCTCCCGGCGCCCCCC
GCCCCTCTGCCTCCCTCCGATTTTTTCTCCTCCCTCCTCCCGAAGCCTCCTCCTCCGCCTCCCT
CTGTTTTTTTCTCCTCCCTCCTGGTTTTTCACTTATGCGCCTCCCTCCTCCCGGCACCCCCTCC
TCTCTCCTCCTCTGCCTCCCTCCGGTTTTTTCTCCTCCCTCCTGGTTTTTCACTTCTGCGCGCC
CCCTCCTTTCTCTCCCTCCGGTTTTTCTCTTCTTTTCCCGATCTCTCTAATCTCCCTCTGGTTT
TTTCCTCTCAAGAAATCTCCTCCCTCCCTTCTATGCAAAAATGAAAAATAATATTGTTGAGAAC
AAGATTTGAACTCATGACCTCATAATCCCTACGTTGTTGCCCTAACCAATAGGACTTGTAAGAT
TTTGTGATTGAGTAATACTTTCTATTTGTTTTGTACCTTCTTTCAAATCAAGAATTAGGAACCC
AACCCTAATCATTTTCATTACCACAATAGGGGTTGTAGTAAGAAATCAACTATGTTACTGCAAA
AGTTATTGATCGTTACTATGTTCCCGTAGTAACATCATTATGGAATTGTAGTAACAAGACATGT
TACTACGAAACTTATAGGTTGTTAGTAGACTTTTTGCGGTAACATCGGGATAGAATGGCAGTTA
CACTGAACAATGTGGCAACAATATTTCTGTAGTACTGCTTTGTTTAGAGAAAAAAACTTTAAAA
GTTTCAATCTTTAGAGAGCAATATTACTCGCATCATATCTTGTTTTTCTAATCCGTTTGCACCA
TGATGTTCATAAAAAAGTGCTTAACGAACCTAGATCCATCATGACTATATTTTAACGTCGTTAC
TATAGAAAGCAGCCATGATACTACACATTGACCATCACGTTACTACAATGTTCCTGCGACACAA
ACCAAAAAGGGGTGGGTGTGGGGGGAGGTCTCTCATGGGCCAACCCACCTCCCCCTCCCTAGGG
CCCAAAACCCACCTCCCACTTCGGTCAAAGAACGGTCAAAGCCCCCTCCCACCGGTCAAACCCG
CCTGCTACCTCCCCCCACGCCCACCTCTTTTCAATTCTCGTCTCTCAAGAATGGCGTAGTAACG
CGATGGTCAATGTGTAGTAAGTTGAGTGCTTTCCGCAGTAACAATGTCAAAAAATAGTCATGAT
GGATTGGTGCAAACAGATTAGAAAAACTAGATATGATGTGAGAGATATTGCTCTCTAAAAGATT
GAGATTTACCTCTTTTCAGTTCTCGTCTCGCTGGAACGGCGTAGTAACACGCTTGTCAAATGTG
TGGTAACACGATTGCTTTCCGCAATAACGATGTTAAAAGTTAGTCATGATGGATGTAGTTTCGT
TAAGCACTTTTTTACGAACGTCATGATGCAAACGGATTAGAAAAACAAGATATGATGTGAGAGA
TATTGCTCTCTAAAGATGAGATCTAAAAGGTTTTAGCTCTACAAAAGCACTAGTACTATAGCTC
CATAGTTACTATTACATGTTCTCTGTTCCTGTAATTTTCATCATGATGTTACCGCCAAGAGTGC
AGTAACCCATAAATTTTGCAGTAAATTATCATGTTACTACCCTTCTATGATAATGTTACTACCG
AATCATAGTAACAAGGTATGGTTCCTACAGTAACATAACTGATTTTGTTCACACAATTTGAACA
GACATTCAACGCAAGCAAACAATGATCTCTAATCACATAGCTCATAGGGTGAATCGTTTATGAG
AGCTTGCCACGAACCATGAGATCAAATTTATTTTTAATTTTTCTAGGTTAAGCCAGTTTCCTTG
AGAGAAAAAATCGGATGAGGGAGGGAGGAGCGCTGATACAGGAGAAGAGAAAAAAAAAGAGAAA
AATAAGGAGGCAGAGGAGGGCGATATGGGAGGAGAAAAAAAGAGAGAAAAATAAGGAGGGAGAA
GAGGGCGCCGATAGAGGGGGATGGAGGAGGGAGATCAGGAGGGGGGAGCGAAAAAAGAGGAAGA
GAGAGAAACGCACGGAGGGAGGAGGGAGGGCAGGGTGCACGAGTTCAAGGGAGGGAGCGCGGGG
GTGGGGAAGAGGAGCGGGCTGGTATGAAGAGGAGGGAGTGGGCCAGGATAAGCGAGGGTGTAGA
TTAGTGTGTGTGACAATTGGTATATATACCAGTTGTTTTATTCATGAACCAAGGTGTGGACATC
CTAATCAGTGGAAAATCCAAAAACCAGTCCAAATTATGAAATATGTATGTTAAAGAAGGGCCAC
TTTCATCAATTTTTTGTGCTGCTATTAGAATGCAAATTTTTAAAGAAGATGAGGTGTTTAGAAA
AATTAATAAATTATGTGCTTGATTAATCTGGAACCTTAAGAATGCCTTATTCTAATCAAATATG
CATTGAATAGCATGTGCCCTTTTTTACTGGTGAAGAAAAAGTTGACATTCCATGGTTTGACACT
AACAAAATTAGATGAAATTTGCAAAGTATAAGGCAGAGATTTTAACTTCACCATTTTGGAATAA
CATGAGCAGACAAACAATTCTTGAGAAGGAAAATAGTGAAAAAGTAGGGAATTTTTTAAGCTAA
ACAAAGAAAATATAACCAACCTCAACATGAAGAGAAAGCTTCTCAATTTGATCGCTGTACTGTG
GAAGAGCTTGAACCATTTTTTGCAAATCTCTATTGGATATCTCTCCCCCAGTT
Conservation Information
Conserved circRNAs NA
PMCS 0.206295159
Functional Information
Coding potential Y
Potential coding position 14946929-14946677(+)
14950810-14946666(+)
14946687-14950878(-)
Potential amino acid sequence MLLSLPQHEEKASQFDRCTVEELEPFFANLYWISLPQFCINFSPLSLSNLSGLIAA*(+)
MKRKLLNLIAVLWKSLNHFLQISIGYLSPSSASIFHPCHFRTCLG*(+)
MIYAAINPDKFESDKGEKLMQNWGRDIQ*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017