Detail information of BGIOSGA006535_circ_g.16


General Information
CircRNA Name BGIOSGA006535_circ_g.16
ID in PlantcircBase osi_circ_011663
Alias Chr02:15209962_15215370(MH63RS2), Chr02:15578067_15583478(ZS97RS2), Chr02:15209962_15215370(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr2: 16004869-16010280  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA006535
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA006535_circ_g.1 BGIOSGA006535_circ_g.2 BGIOSGA006535_circ_g.3 BGIOSGA006535_circ_g.4 BGIOSGA006535_circ_g.5 BGIOSGA006535_circ_g.6 BGIOSGA006535_circ_g.7 BGIOSGA006535_circ_g.8 BGIOSGA006535_circ_g.9 BGIOSGA006535_circ_g.10 BGIOSGA006535_circ_g.11 BGIOSGA006535_circ_g.12 BGIOSGA006535_circ_g.13 BGIOSGA006535_circ_g.14 BGIOSGA006535_circ_g.15 BGIOSGA006535_circ_g.17 BGIOSGA006535_circ_g.18 BGIOSGA006535_circ_g.19 BGIOSGA006535_circ_g.20 BGIOSGA006535_circ_g.21 BGIOSGA006535_circ_g.22 BGIOSGA006535_circ_g.23
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA006535-TA:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTACATAAGAGGAGATTCAAGTGGCGGTTTATGTTAATTCAGACATACTTCTTGTATAACGGA
TTTCTTCCGGACATGTCATTCAGGAACATCCCAATGcctcaacatgaagagaaagcttctcaat
ttgatcgctgtactgtggaagagcttgaaccattttttgcaaatctctattggatatctctccc
ccagttct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osa_circ_014585
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021