Plant Circular RNA Database

Detail information of Os02g0452500_circ_g.23

			
						 General Information
					
						CircRNA Name
						Os02g0452500_circ_g.23
					
						ID in PlantcircBase
						osa_circ_014591
					
						Alias
						Os02circ12315/Os_ciR1061
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 14954409-14956208  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, SMALT, Segemehl, find_circ
					
						Parent gene
						
							Os02g0452500						
					
						Parent gene annotation
						
							Similar to SNARE-interacting protein KEULE. (Os02t0452500-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0452500_circ_g.1 Os02g0452500_circ_g.2 Os02g0452500_circ_g.3 Os02g0452500_circ_g.4 Os02g0452500_circ_g.5 Os02g0452500_circ_g.6 Os02g0452500_circ_g.7 Os02g0452500_circ_g.8 Os02g0452500_circ_g.9 Os02g0452500_circ_g.10 Os02g0452500_circ_g.11 Os02g0452500_circ_g.12 Os02g0452500_circ_g.13 Os02g0452500_circ_g.14 Os02g0452500_circ_g.15 Os02g0452500_circ_g.16 Os02g0452500_circ_g.17 Os02g0452500_circ_g.18 Os02g0452500_circ_g.19 Os02g0452500_circ_g.20 Os02g0452500_circ_g.21 Os02g0452500_circ_g.22 Os02g0452500_circ_g.24 Os02g0452500_circ_g.25 Os02g0452500_circ_g.26 						
					
						Support reads
						2/24/7
					
						Tissues
						leaf/root/shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0452500-01:2

General Information
CircRNA Name	Os02g0452500_circ_g.23
ID in PlantcircBase	osa_circ_014591
Alias	Os02circ12315/Os_ciR1061
Organism	Oryza sativa
Position	chr2: 14954409-14956208 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer, SMALT, Segemehl, find_circ
Parent gene	Os02g0452500
Parent gene annotation	Similar to SNARE-interacting protein KEULE. (Os02t0452500-01)
Parent gene strand	-
Alternative splicing	Os02g0452500_circ_g.1 Os02g0452500_circ_g.2 Os02g0452500_circ_g.3 Os02g0452500_circ_g.4 Os02g0452500_circ_g.5 Os02g0452500_circ_g.6 Os02g0452500_circ_g.7 Os02g0452500_circ_g.8 Os02g0452500_circ_g.9 Os02g0452500_circ_g.10 Os02g0452500_circ_g.11 Os02g0452500_circ_g.12 Os02g0452500_circ_g.13 Os02g0452500_circ_g.14 Os02g0452500_circ_g.15 Os02g0452500_circ_g.16 Os02g0452500_circ_g.17 Os02g0452500_circ_g.18 Os02g0452500_circ_g.19 Os02g0452500_circ_g.20 Os02g0452500_circ_g.21 Os02g0452500_circ_g.22 Os02g0452500_circ_g.24 Os02g0452500_circ_g.25 Os02g0452500_circ_g.26
Support reads	2/24/7
Tissues	leaf/root/shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0452500-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGTACATAAGAGGAGATTCAAGTGGCGGTTTATGTTAATTCAGACATACTTCTTGTATAACGGA
TTTCTTCCGGACATGTCATTCAGGAACATCCCAATGcctcattgatgcaaacactgtagatatg
cgagtagccattgtgttcaaacaagcattgtacttgtgtgaatccaaagcattttcactaaaaa
gctcctcc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 182
Transcript exons: 14954409-14954537,14956156-14956208
CCTCATTGATGCAAACACTGTAGATATGCGAGTAGCCATTGTGTTCAAACAAGCATTGTACTTG
TGTGAATCCAAAGCATTTTCACTAAAAAGCTCCTCCAATGCTCTTTCATGGTCAGTGGTGAAAC
CACTTCTTGTATAACGGATTTCTTCCGGACATGTCATTCAGGAACATCCCAATG
Transcript length: 513
Transcript exons: 14954409-14954537,14955825-14956208
CCTCATTGATGCAAACACTGTAGATATGCGAGTAGCCATTGTGTTCAAACAAGCATTGTACTTG
TGTGAATCCAAAGCATTTTCACTAAAAAGCTCCTCCAATGCTCTTTCATGGTCAGTGGTGAAAC
CCTGGGAATCAATAGCAAAGTACTCCAAATTCATCTGGAATACAACGAAAAATAAAATGTGAAT
AAATAGTTAGCATAACAGTCTTTTATATTTAAAACATTCTGGAATAAAATATAAGAGGATAGCA
TAATCCAAGTAACCTCACTAAGTGCACCAATACGGGGTAGTACACTTGAATCTTTTTTTATTTG
AGTAACTAATTCTTTCTGTATGGGAGAACTGAAAAACACATACGCCCTACAACATGATCAACAA
TCTATCAGTGAAAGAAACAGAATAGAGATTGTACATAAGAGGAGATTCAAGTGGCGGTTTATGT
TAATTCAGACATACTTCTTGTATAACGGATTTCTTCCGGACATGTCATTCAGGAACATCCCAAT
G
						
					

						Genomic sequence
						
							CCTCATTGATGCAAACACTGTAGATATGCGAGTAGCCATTGTGTTCAAACAAGCATTGTACTTG
TGTGAATCCAAAGCATTTTCACTAAAAAGCTCCTCCAATGCTCTTTCATGGTCAGTGGTGAAAC
CCTGCATGCAATCACTAGCAATATAACGTACCAGAGAAAAGGGATTACCATGTAATGGTTGGTA
CTTTGACTAGCATCTATGTCCTCTCTATAAGATAATAAATATGGTATCATCATTCAAGTAGCAC
GATAAAATTTACCGTTTACACTAACTTGTAACAGTATTAGATATAATTAGAAAATAGGTTACCA
GTTGACAGGCAAAATTTCTAAAGTTGGTTATTTATCATTGCAACTACCAGCAACCAACCAAAAT
GACCAGAATCAAATCTTAGAGAATTTCCAATAATCCTAGCTGTGTATCATGGAAGTATTGAAAT
TTACATTAAAGGCAATTCAAACCATTCTTGTCACTGCCAATGATTGGGTTTTTCCCACGTTGCT
CATATCATTCGCTCATAAGGCGTATCTATTGGGTCCCTTTTTCTCCTGACCAAGCCAGCTGGCT
TCTTTCAAACAAAAAAGGATCCAGCTGATTTGCAGAAATAGGAAATGAACTCCTAAAATCATGC
ACTTGTTTAGGGAGGTCCACGATTTAAGATAGCCTATTGTAAATGTGCTTCCAAGAAATTCAGA
AATATGCTTTAAAATTTAATATGTACAGTTAGGGCTTATGTAAAAGTCAAACAGCAAAAAAAAA
TTAATATATGTTCTGTATAGAAATTATTTTTGAGAAATTTTTTTGGTGGCAGTTCAAAACCAGC
TTAACAGAGCTGGCAAAATGACTAAACCAGAGGCAAAAGGACCCTAGATGTGGGATCCACAAGC
AAGAATGATCGAATATAAGCAAAGTGGCAAAATCAGTTCAGATATCTTTGGAGTGAAATCAATG
CCATTACATTCTTGGGAGTGGCATTTTTTCAAAATGGCAAATTTCAAGTGGTATGAACCCGAAA
AGCCCAAAATGGGAACAAAAACTCAGAAAAATATTTAGTTATCATGGATCTGTTTACAGTATAA
CATTGTTTTCAAGTTCTTTAAACCGAAAAATATATTAGGTCAAAAGGAAAATGACGATGTGTTT
GTGAGCTATCCTATATTATTAACCAAATAACACCAAATGCTTCTCCTTTTTTAATTGCATGAGA
ACTTCTCAAGTTGTAGAGCAAAGTATCAGGGCTCAATTGCTCAAATACTCAATCCTATGCGTAA
ATCATGGATGAACAAAACAATTCCTATAAAAAATTGCATGAAATTATTTATGCTTCAAGAATAT
ATGTAACAGATACAAACTATAAATGAAACACTGAAATTTCCGCAAGAAAAAAAAACAGATGTGC
CATGATACCTGGGAATCAATAGCAAAGTACTCCAAATTCATCTGGAATACAACGAAAAATAAAA
TGTGAATAAATAGTTAGCATAACAGTCTTTTATATTTAAAACATTCTGGAATAAAATATAAGAG
GATAGCATAATCCAAGTAACCTCACTAAGTGCACCAATACGGGGTAGTACACTTGAATCTTTTT
TTATTTGAGTAACTAATTCTTTCTGTATGGGAGAACTGAAAAACACATACGCCCTACAACATGA
TCAACAATCTATCAGTGAAAGAAACAGAATAGAGATTGTACATAAGAGGAGATTCAAGTGGCGG
TTTATGTTAATTCAGACATACTTCTTGTATAACGGATTTCTTCCGGACATGTCATTCAGGAACA
TCCCAATG
						
					

			
		

Sequences
Splice junction sequence	TGTACATAAGAGGAGATTCAAGTGGCGGTTTATGTTAATTCAGACATACTTCTTGTATAACGGA TTTCTTCCGGACATGTCATTCAGGAACATCCCAATGcctcattgatgcaaacactgtagatatg cgagtagccattgtgttcaaacaagcattgtacttgtgtgaatccaaagcattttcactaaaaa gctcctcc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 182 Transcript exons: 14954409-14954537,14956156-14956208 CCTCATTGATGCAAACACTGTAGATATGCGAGTAGCCATTGTGTTCAAACAAGCATTGTACTTG TGTGAATCCAAAGCATTTTCACTAAAAAGCTCCTCCAATGCTCTTTCATGGTCAGTGGTGAAAC CACTTCTTGTATAACGGATTTCTTCCGGACATGTCATTCAGGAACATCCCAATG Transcript length: 513 Transcript exons: 14954409-14954537,14955825-14956208 CCTCATTGATGCAAACACTGTAGATATGCGAGTAGCCATTGTGTTCAAACAAGCATTGTACTTG TGTGAATCCAAAGCATTTTCACTAAAAAGCTCCTCCAATGCTCTTTCATGGTCAGTGGTGAAAC CCTGGGAATCAATAGCAAAGTACTCCAAATTCATCTGGAATACAACGAAAAATAAAATGTGAAT AAATAGTTAGCATAACAGTCTTTTATATTTAAAACATTCTGGAATAAAATATAAGAGGATAGCA TAATCCAAGTAACCTCACTAAGTGCACCAATACGGGGTAGTACACTTGAATCTTTTTTTATTTG AGTAACTAATTCTTTCTGTATGGGAGAACTGAAAAACACATACGCCCTACAACATGATCAACAA TCTATCAGTGAAAGAAACAGAATAGAGATTGTACATAAGAGGAGATTCAAGTGGCGGTTTATGT TAATTCAGACATACTTCTTGTATAACGGATTTCTTCCGGACATGTCATTCAGGAACATCCCAAT G
Genomic sequence	CCTCATTGATGCAAACACTGTAGATATGCGAGTAGCCATTGTGTTCAAACAAGCATTGTACTTG TGTGAATCCAAAGCATTTTCACTAAAAAGCTCCTCCAATGCTCTTTCATGGTCAGTGGTGAAAC CCTGCATGCAATCACTAGCAATATAACGTACCAGAGAAAAGGGATTACCATGTAATGGTTGGTA CTTTGACTAGCATCTATGTCCTCTCTATAAGATAATAAATATGGTATCATCATTCAAGTAGCAC GATAAAATTTACCGTTTACACTAACTTGTAACAGTATTAGATATAATTAGAAAATAGGTTACCA GTTGACAGGCAAAATTTCTAAAGTTGGTTATTTATCATTGCAACTACCAGCAACCAACCAAAAT GACCAGAATCAAATCTTAGAGAATTTCCAATAATCCTAGCTGTGTATCATGGAAGTATTGAAAT TTACATTAAAGGCAATTCAAACCATTCTTGTCACTGCCAATGATTGGGTTTTTCCCACGTTGCT CATATCATTCGCTCATAAGGCGTATCTATTGGGTCCCTTTTTCTCCTGACCAAGCCAGCTGGCT TCTTTCAAACAAAAAAGGATCCAGCTGATTTGCAGAAATAGGAAATGAACTCCTAAAATCATGC ACTTGTTTAGGGAGGTCCACGATTTAAGATAGCCTATTGTAAATGTGCTTCCAAGAAATTCAGA AATATGCTTTAAAATTTAATATGTACAGTTAGGGCTTATGTAAAAGTCAAACAGCAAAAAAAAA TTAATATATGTTCTGTATAGAAATTATTTTTGAGAAATTTTTTTGGTGGCAGTTCAAAACCAGC TTAACAGAGCTGGCAAAATGACTAAACCAGAGGCAAAAGGACCCTAGATGTGGGATCCACAAGC AAGAATGATCGAATATAAGCAAAGTGGCAAAATCAGTTCAGATATCTTTGGAGTGAAATCAATG CCATTACATTCTTGGGAGTGGCATTTTTTCAAAATGGCAAATTTCAAGTGGTATGAACCCGAAA AGCCCAAAATGGGAACAAAAACTCAGAAAAATATTTAGTTATCATGGATCTGTTTACAGTATAA CATTGTTTTCAAGTTCTTTAAACCGAAAAATATATTAGGTCAAAAGGAAAATGACGATGTGTTT GTGAGCTATCCTATATTATTAACCAAATAACACCAAATGCTTCTCCTTTTTTAATTGCATGAGA ACTTCTCAAGTTGTAGAGCAAAGTATCAGGGCTCAATTGCTCAAATACTCAATCCTATGCGTAA ATCATGGATGAACAAAACAATTCCTATAAAAAATTGCATGAAATTATTTATGCTTCAAGAATAT ATGTAACAGATACAAACTATAAATGAAACACTGAAATTTCCGCAAGAAAAAAAAACAGATGTGC CATGATACCTGGGAATCAATAGCAAAGTACTCCAAATTCATCTGGAATACAACGAAAAATAAAA TGTGAATAAATAGTTAGCATAACAGTCTTTTATATTTAAAACATTCTGGAATAAAATATAAGAG GATAGCATAATCCAAGTAACCTCACTAAGTGCACCAATACGGGGTAGTACACTTGAATCTTTTT TTATTTGAGTAACTAATTCTTTCTGTATGGGAGAACTGAAAAACACATACGCCCTACAACATGA TCAACAATCTATCAGTGAAAGAAACAGAATAGAGATTGTACATAAGAGGAGATTCAAGTGGCGG TTTATGTTAATTCAGACATACTTCTTGTATAACGGATTTCTTCCGGACATGTCATTCAGGAACA TCCCAATG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_003899* osi_circ_011664 						
					
						PMCS
						0.341496606

Conservation Information
Conserved circRNAs	osi_circ_003899* osi_circ_011664
PMCS	0.341496606

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							14956036-14954414(+)
14955859-14956190(-)
						
						Potential amino acid sequence
						
							MGELKNTYALQHDQQSISERNRIEIVHKRRFKWRFMLIQTYFLYNGFLPDMSFRNIPMPH*(+)
MNLEYFAIDSQGFTTDHERALEELFSENALDSHKYNACLNTMATRISTVFASMRHWDVPE*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	14956036-14954414(+) 14955859-14956190(-)
Potential amino acid sequence	MGELKNTYALQHDQQSISERNRIEIVHKRRFKWRFMLIQTYFLYNGFLPDMSFRNIPMPH(+) MNLEYFAIDSQGFTTDHERALEELFSENALDSHKYNACLNTMATRISTVFASMRHWDVPE(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os02g0452500_circ_g.23

Address

Any questions?

Supported by