Detail information of BGIOSGA034174_circ_g.8


General Information
CircRNA Name BGIOSGA034174_circ_g.8
ID in PlantcircBase osi_circ_009496
Alias Chr11:9478227_9480075(MH63RS2), Chr11:9396872_9398720(ZS97RS2), Chr11:9478227_9480075(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 7696836-7698684  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRI2, CIRCexplorer2, CIRI2
Parent gene BGIOSGA034174
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA034174_circ_g.3 BGIOSGA034174_circ_g.4 BGIOSGA034174_circ_g.5 BGIOSGA034174_circ_g.6 BGIOSGA034174_circ_g.7 BGIOSGA034174_circ_g.9 BGIOSGA034174_circ_g.10 BGIOSGA034174_circ_g.11
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered BGIOSGA034174-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATCTAGTTCACCACACTCTTTATAAATGCTACCAAGTAGATGGTATGAATTTGACAAATTCGG
CGCGATCCGCACAACCTCATGTAATATAGGAATTGCcatcattatgaacagcaacatcttcaat
catcaggtaaaactttattgcatactcatattgtcctaaattttcgagagtgctagcaacctcc
ttgatcac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATCATTATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCC
TAAATTTTCGAGAGTGCTAGCAACCTCCTTGATCACATCGGTGTTATCTTTTGAACGCTCCAGA
TGCACATTCTGAAGAAACACCTGCACAAGTAATACCAATTCAATAACTAAGAAACTCAAAACTA
TACGTTGAAGTAGTCTTGGATACAGTATATACACAAGCACAATCTAATCTTGCAGAGTACAACC
TGTTATCAGAGCAATTTATAGTCATATCGAGGATTTATAGTGTCTAATAAACCAATGGTAGCAA
AAGGTGGGTTTTGACTAATCAAGGATAAATTATGTCAAGTGTGTGCTATAATGGAACAGAACTG
GGACAAACCTCGGCATGCTTCATATCTCCAAGATAAGCATGGCAGATTACAGCTTTTGCCTGCA
ATTGTACTGGCAAATTGTGTTGAGATCCAAACACTATATGTGCTCTATCAATCAGCCTCAATGC
TTCATTATAGGCATTATTTCTCAGATAAAGGGATATCAGTAGATCCAGATGATTCGAGTCGATG
TTTGTAGTTTGAGCATTCACATAATCCTCCAATAAATTAATAGCTTTATCAATTTGACCACAGT
CCCTGTACATCTGGACAAAAAAGTCACAAAGCAATAAGTGGAAGTCTAGAACTAACTCAGCAGT
CCATATTGTTATGTACTGGCTTCAGTGATTAGATAGCAGTTCAGATATATGAGTTCTTAGTTGT
GTCATGTGCATCCAGGTGTCTAGAGTCAAGTCTTAGCAGTTGGCATCCAGGAGTCCAAGAGTCT
ATAGAAGTTAAGAGCCCTCATACTTGCTTGTGCCTTAAGCTAAATAGAGATAAGTGTCCTGTTT
GGATGGTGCTAATTGGTCTTGTTTACATGCATGTCTAGGGACCTATATGTTTGTATTCATTGAC
TCAAATAGAGGCATGAAAGATCATTATATCTGTATCTCCCTCTTGTCCCTGACTACAATGGTTC
CCTGCCGCTGGCTACCAGGAAGAACCTCATTCACCAACGCTACTAGCCCATAAAAGCTAAAATC
AATTTGTAATTTATATGCACCACAAAATAACGCAAGAATTGTTATAAGCAAATAAACCTGTGCT
GCTGCTTTACGAGCAACAATGTTTGAAGGATAAATTCTGACTATCTGCTCGTATATCTCTCCAG
CTTTCTGATAGTCACGCAAAGCGCGATATATATTAGCACAATCAAACTTCAGTCCTACATCTTC
AGGATCTGCTCTCATCGCTTTTAAAACACAGTGTCTTGCTAAAGCAGCATCTTCCTTTTTCCTG
ACAAATATAATAAAGTAGTCAATATGGTCCGTTATATTATTATTTCTGGCCATTGTATGCCTTA
CCTCCAAGAAAAAATTATGCTAGGTAATCAGCAATTAAGGTACTTTGGGTTCATGTATTAACAA
GAACTAGAGGCTTCCTGAAAATTAGTATCATAAAACATAAAAGCAAAATTGAGGTCTGAGGATG
AGACCATATTACTGAATGCAACATTTGTACTCTGCATAAATCAAGCTAACTACTGTAACAAATT
AAAAGTTTATGAATAGAATTAAAAAAATGAAACATAGAAAAAGGAAAAAGGATTAGCATTAACT
CACAATGCCATGTCAATGAGTTTCTTCCACAAAAATACATCCTTTGGAGAAACATATGCAGCGA
GCATTAGAAAGTTTATGGCTTTATCTAGTTCACCACACTCTTTATAAATGCTACCAAGTAGATG
GTATGAATTTGACAAATTCGGCGCGATCCGCACAACCTCATGTAATATAGGAATTGC
Conservation Information
Conserved circRNAs osa_circ_009043
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021