Detail information of Os11g0573000_circ_g.1


General Information
CircRNA Name Os11g0573000_circ_g.1
ID in PlantcircBase osa_circ_009655
Alias NA
Organism Oryza sativa
Position chr11: 21502019-21507298  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os11g0573000
Parent gene annotation Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family pr
otein. (Os11t0573000-01);Similar to Ubiquitin carboxyl-terminal
hydrolase family protein, expressed. (Os11t0573000-02)
Parent gene strand -
Alternative splicing Os11g0573000_circ_g.2 Os11g0573000_circ_g.3 Os11g0573000_circ_g.4 Os11g0573000_circ_g.5 Os11g0573000_circ_g.6 Os11g0573000_circ_g.7
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0573000-02:6
Os11t0573000-01:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACATACTCCAGATACGAAGGGACATCTGGATAACGCATTTGAGTGTCACTATCAGGTATAGG
TGATTTTTGGAAACAGATGATGTCCCCATCTTCAAGctgattggctgtgtaggccctttttggt
gcagtatcagcatgctccaaaccaagatactgctcccaggctccatagacatctctcctctgaa
gaaatcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.10968026
Functional Information
Coding potential Y
Potential coding position 21507240-21502021(-)
21502226-21504554(-)
Potential amino acid sequence MRYPDVPSYLEYVHNRQVVHFRLLEKPKDDDFSLELSKLHTYDDVVERVARQLGVDDPAKIRLT
SHNCYSQQPKPQPIRYRGVEHLLDMLIHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKD
EVVIHSIRLPKNSTIADVINDLKTKVELSSPSAELRLLEVFYHKIYKIFPLHEKIENINDQYWT
LRAEEIPEEEKNLGPNDRLIHVYHFMKDPLQNQQIQNFGDPFYLAIREGETLAEVKERIQKKLQ
VPDEEFCKWKFAFISMNRPDYLQDSDVVSARFQRRDVYGAWEQYLGLEHADTAPKRAYTANQLE
DGDIICFQKSPIPDSDTQMRYPDVPSYLEYVHNRQVVHFRLLEKPKDDDFSLELSKLHTYDDVV
ERVARQLGVDDPAKIRLTSHNCYSQQPKPQPIRYRGVEHLLDMLIHYNQTSDILYYEVLDIPLP
ELQGLKTLKVAFHHATKDEVVIHSIRLPKNSTIADVINDLKTKVELSSPSAELRLLEVFYHKIY
KIFPLHEKIENINDQYWTLRAEEIPEEEKNLGPNDRLIHVYHFMKDPLQNQQIQNFGDPFYLAI
REGETLAEVKERIQKKLQVPDEEFCKWKFAFISMNRPDYLQDSDVVSARFQRRDVYGAWEQYLG
LEHADTAPKRAYTANQLEDGDIICFQKSPIPDSDTQMRYPDVPSYLEYVHNRQVVHFRLLEKPK
DDDFSLELSKLHTYDDVVERVARQLGVDDPAKIRLTSHNCYSQQPKPQPIRYRGVEHLLDMLIH
YNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVIHSIRLPKNSTIADVINDLKTKVEL
SSPSAELRLLEVFYHKIYKIFPLHEKIENINDQYWTLRAEEIPEEEKNLGPNDRLIHVYHFMKD
PLQNQQIQNFGDPFYLAIREGETLAEVKERIQKKLQVPDEEFCKWKFAFISMNRPDYLQDSDVV
SARFQRRDVYGAWEQYLGLEHADTAPKRAYTANQLEDGDIICFQKSPIPDSDTQMRYPDVPSYL
EYVHNRQVVHFRLLEKPKDDDFSLELSKLHTYDDVVERVARQLGVDDPAKIRLTSHNCYSQQPK
PQPIRYRGVEHLLDMLIHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVIHSIRLP
KNSTIADVINDLKTKVELSSPSAELRLLEVFYHKIYKIFPLHEKIENINDQYWTLRAEEIPEEE
KNLGPNDRLIHVYHFMKDPLQNQQIQNFGDPFYLAIREGETLAEVKERIQKKLQVPDEEFCKWK
FAFISMNRPDYLQDSDVVSARFQRRDVYGAWEQYLGLEHADTAPKRAYTANQ(-)
MLYLPVSRGEMSMEPGSSILVWSMLILHQKGPTQPISLKMGTSSVSKNHLYLIVTLKCVIQMSL
RIWSMFIIGRLCTFGYWRNQRMMTFLWNCQNFIPMMMLLRELPVSLVWMIQRKFV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017