Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os11g0573000_circ_g.1 |
ID in PlantcircBase | osa_circ_009655 |
Alias | NA |
Organism | Oryza sativa |
Position | chr11: 21502019-21507298 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | u-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os11g0573000 |
Parent gene annotation |
Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family pr otein. (Os11t0573000-01);Similar to Ubiquitin carboxyl-terminal hydrolase family protein, expressed. (Os11t0573000-02) |
Parent gene strand | - |
Alternative splicing | Os11g0573000_circ_g.2 Os11g0573000_circ_g.3 Os11g0573000_circ_g.4 Os11g0573000_circ_g.5 Os11g0573000_circ_g.6 Os11g0573000_circ_g.7 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os11t0573000-02:6 Os11t0573000-01:11 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.10968026 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
21507240-21502021(-) 21502226-21504554(-) |
Potential amino acid sequence |
MRYPDVPSYLEYVHNRQVVHFRLLEKPKDDDFSLELSKLHTYDDVVERVARQLGVDDPAKIRLT SHNCYSQQPKPQPIRYRGVEHLLDMLIHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKD EVVIHSIRLPKNSTIADVINDLKTKVELSSPSAELRLLEVFYHKIYKIFPLHEKIENINDQYWT LRAEEIPEEEKNLGPNDRLIHVYHFMKDPLQNQQIQNFGDPFYLAIREGETLAEVKERIQKKLQ VPDEEFCKWKFAFISMNRPDYLQDSDVVSARFQRRDVYGAWEQYLGLEHADTAPKRAYTANQLE DGDIICFQKSPIPDSDTQMRYPDVPSYLEYVHNRQVVHFRLLEKPKDDDFSLELSKLHTYDDVV ERVARQLGVDDPAKIRLTSHNCYSQQPKPQPIRYRGVEHLLDMLIHYNQTSDILYYEVLDIPLP ELQGLKTLKVAFHHATKDEVVIHSIRLPKNSTIADVINDLKTKVELSSPSAELRLLEVFYHKIY KIFPLHEKIENINDQYWTLRAEEIPEEEKNLGPNDRLIHVYHFMKDPLQNQQIQNFGDPFYLAI REGETLAEVKERIQKKLQVPDEEFCKWKFAFISMNRPDYLQDSDVVSARFQRRDVYGAWEQYLG LEHADTAPKRAYTANQLEDGDIICFQKSPIPDSDTQMRYPDVPSYLEYVHNRQVVHFRLLEKPK DDDFSLELSKLHTYDDVVERVARQLGVDDPAKIRLTSHNCYSQQPKPQPIRYRGVEHLLDMLIH YNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVIHSIRLPKNSTIADVINDLKTKVEL SSPSAELRLLEVFYHKIYKIFPLHEKIENINDQYWTLRAEEIPEEEKNLGPNDRLIHVYHFMKD PLQNQQIQNFGDPFYLAIREGETLAEVKERIQKKLQVPDEEFCKWKFAFISMNRPDYLQDSDVV SARFQRRDVYGAWEQYLGLEHADTAPKRAYTANQLEDGDIICFQKSPIPDSDTQMRYPDVPSYL EYVHNRQVVHFRLLEKPKDDDFSLELSKLHTYDDVVERVARQLGVDDPAKIRLTSHNCYSQQPK PQPIRYRGVEHLLDMLIHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVIHSIRLP KNSTIADVINDLKTKVELSSPSAELRLLEVFYHKIYKIFPLHEKIENINDQYWTLRAEEIPEEE KNLGPNDRLIHVYHFMKDPLQNQQIQNFGDPFYLAIREGETLAEVKERIQKKLQVPDEEFCKWK FAFISMNRPDYLQDSDVVSARFQRRDVYGAWEQYLGLEHADTAPKRAYTANQ(-) MLYLPVSRGEMSMEPGSSILVWSMLILHQKGPTQPISLKMGTSSVSKNHLYLIVTLKCVIQMSL RIWSMFIIGRLCTFGYWRNQRMMTFLWNCQNFIPMMMLLRELPVSLVWMIQRKFV*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |