Detail information of Os11g0573000_circ_g.6


General Information
CircRNA Name Os11g0573000_circ_g.6
ID in PlantcircBase osa_circ_009660
Alias NA
Organism Oryza sativa
Position chr11: 21508538-21509640  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os11g0573000
Parent gene annotation Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family pr
otein. (Os11t0573000-01);Similar to Ubiquitin carboxyl-terminal
hydrolase family protein, expressed. (Os11t0573000-02)
Parent gene strand -
Alternative splicing Os11g0573000_circ_g.1 Os11g0573000_circ_g.2 Os11g0573000_circ_g.3 Os11g0573000_circ_g.4 Os11g0573000_circ_g.5 Os11g0573000_circ_g.7
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0573000-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAATTATCAGGTAGAACACACCTCTTCCTCACCCCCGTATTGCTCTTCAAGGGCCTTCTTAGTA
TCTTCTTTAGTTACACGCTCATCATCAAATTTATACagattgtgtttcttcatgaggactcaat
ggacgattaggcctgtatgtgtggttctgcctcttagcccacaaccagaagcgctgaaattgta
cagggatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 550
Transcript exons: 21508538-21508660,21508784-21508903,21509004-21509084,21
509314-21509460,21509562-21509640
AGATTGTGTTTCTTCATGAGGACTCAATGGACGATTAGGCCTGTATGTGTGGTTCTGCCTCTTA
GCCCACAACCAGAAGCGCTGAAATTGTACAGGGATGCCATACTCCTTTGCAACTTCCTCCTTGA
AAGTGGTAAACAGTAACTGCTTCTGAATTCGGAAGCTACGAACTTTTTCATGGTCCACCAGGTC
AAAATATATATCCTTGCCAATTTGCTCCTTCAAATTCTCATCTCGAGCCACCTTTATGATGGTA
TAAAGATGAGCTTCAGCCTTCTCTTTCTTTTTGTGTTCTTTCTCTTCTTGTTCTTTCTTCAACC
TTACCCTTAAATGCTCAGCAATGTCCTTCTCATCAACATTACACATTATTTTGTCCTTATCACT
CTCACGGATGTAGACAAGCATGTAGGCATTTGAATACTTTGTGAATTTAAATGGAGCGTTGTTG
AAACCAGGATTTATTTGAGGCAACTCTTCCTCACCCCCGTATTGCTCTTCAAGGGCCTTCTTAG
TATCTTCTTTAGTTACACGCTCATCATCAAATTTATAC

Genomic sequence AGATTGTGTTTCTTCATGAGGACTCAATGGACGATTAGGCCTGTATGTGTGGTTCTGCCTCTTA
GCCCACAACCAGAAGCGCTGAAATTGTACAGGGATGCCATACTCCTTTGCAACTTCCTCCTATT
AAACAATTTATTCAACAGAAGTTAAATTACCAGTTGATTTTACAGAAGCATGTGTACTCGTATA
GCAGAAATTTAGCATTCCAATGCTACGAACCAAGAACTTGTTTGCACACCTTACCTTGAAAGTG
GTAAACAGTAACTGCTTCTGAATTCGGAAGCTACGAACTTTTTCATGGTCCACCAGGTCAAAAT
ATATATCCTTGCCAATTTGCTCCTTCAAATTCTCATCTCGAGCCACCTAGATATATTTGTCCAA
ACAGAGCACTATGAGAAACAGATTCACAGAGAGGTTCCAGACTGAGATGAAGTGATGAACATAA
TAGTAGTCAGATGCTGACCTTTATGATGGTATAAAGATGAGCTTCAGCCTTCTCTTTCTTTTTG
TGTTCTTTCTCTTCTTGTTCTTTCTTCAACCTTACCTGAAAATCCACAGTTTATCATCCAAACT
GTATCAGAAGTCCATGACATTAAAAGGGAGAAAACCAGGAAATACCATCGTAAAGATATGCAGA
TTGTAAAATATCACCACATATGAGAATGACCCATGGGGCCTGGGCCCACGTGTGTTGACACATG
CGATGGTATTTTCCAATCGTGGTATCGAGGAAATTGGCCCAAGGAGGAGTGAGAATGCAAAACA
ACACATACCCTTAAATGCTCAGCAATGTCCTTCTCATCAACATTACACATTATTTTGTCCTTAT
CACTCTCACGGATGTAGACAAGCATGTAGGCATTTGAATACTTTGTGAATTTAAATGGAGCGTT
GTTGAAACCAGGATTTATTTGAGGCAACTGTTCAGCCCAAAAGAGATTAAAATTACGGAAACAG
GAAAACAAACATATGTAGTTCAATATCTCATATCATTCAATATCAATTATCAGGTAGAACACAC
CTCTTCCTCACCCCCGTATTGCTCTTCAAGGGCCTTCTTAGTATCTTCTTTAGTTACACGCTCA
TCATCAAATTTATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.288916856
Functional Information
Coding potential Y
Potential coding position 21509396-21509637(-)
21508556-21509637(-)
Potential amino acid sequence MLVYIRESDKDKIMCNVDEKDIAEHLRVRLKKEQEEKEHKKKEKAEAHLYTIIKVARDENLKEQ
IGKDIYFDLVDHEKVRSFRIQKQLLFTTFKEEVAKEYGIPVQFQRFWLWAKRQNHTYRPNRPLS
PHEETQSV*(-)
MKKHNLYKFDDERVTKEDTKKALEEQYGGEEELPQINPGFNNAPFKFTKYSNAYMLVYIRESDK
DKIMCNVDEKDIAEHLRVRLKKEQEEKEHKKKEKAEAHLYTIIKVARDENLKEQIGKDIYFDLV
DHEKVRSFRIQKQLLFTTFKEEVAKEYGIPVQFQRFWLWAKRQNHTYRPNRPLSPHEETQSV*(
-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017