Detail information of Os11g0573000_circ_g.2


General Information
CircRNA Name Os11g0573000_circ_g.2
ID in PlantcircBase osa_circ_009656
Alias Os_ciR7104
Organism Oryza sativa
Position chr11: 21507188-21507451  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method find_circ
Parent gene Os11g0573000
Parent gene annotation Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family pr
otein. (Os11t0573000-01);Similar to Ubiquitin carboxyl-terminal
hydrolase family protein, expressed. (Os11t0573000-02)
Parent gene strand -
Alternative splicing Os11g0573000_circ_g.1 Os11g0573000_circ_g.3 Os11g0573000_circ_g.4 Os11g0573000_circ_g.5 Os11g0573000_circ_g.6 Os11g0573000_circ_g.7
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os11t0573000-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCCTTAACCAAAAGAAACATGTTATAAACCTGACTAGCACGGAAAGTGGCTTTTTTGTCAAT
ATGTTCACACATCACATTTGGCTCAAATTTAATTTCctgcctattatgaacatactccagatac
gaagggacatctggataacgcatttgagtgtcactatcaggtataggtgatttttggaaacaga
tgatgtcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCCTATTATGAACATACTCCAGATACGAAGGGACATCTGGATAACGCATTTGAGTGTCACTA
TCAGGTATAGGTGATTTTTGGAAACAGATGATGTCCCCATCTTCAAGCTACAATATTTGGAGCA
TTTTGCAAATCAATAAGTGTTTAATTCAAATTTGGCATTCCTTAACCAAAAGAAACATGTTATA
AACCTGACTAGCACGGAAAGTGGCTTTTTTGTCAATATGTTCACACATCACATTTGGCTCAAAT
TTAATTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.325267298
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015