Detail information of Os11g0573000_circ_g.7


General Information
CircRNA Name Os11g0573000_circ_g.7
ID in PlantcircBase osa_circ_009661
Alias Os_ciR7106
Organism Oryza sativa
Position chr11: 21509445-21509550  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method find_circ
Parent gene Os11g0573000
Parent gene annotation Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family pr
otein. (Os11t0573000-01);Similar to Ubiquitin carboxyl-terminal
hydrolase family protein, expressed. (Os11t0573000-02)
Parent gene strand -
Alternative splicing Os11g0573000_circ_g.1 Os11g0573000_circ_g.2 Os11g0573000_circ_g.3 Os11g0573000_circ_g.4 Os11g0573000_circ_g.5 Os11g0573000_circ_g.6
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os11t0573000-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAAACAAACATATGTAGTTCAATATCTCATATCATTCAATATCAATTATCAGgatttatttga
ggcaactgttcagcccaaaagagattaaaattacggaaacag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATTTATTTGAGGCAACTGTTCAGCCCAAAAGAGATTAAAATTACGGAAACAGGAAAACAAACA
TATGTAGTTCAATATCTCATATCATTCAATATCAATTATCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.132075472
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015