Detail information of Os11g0573000_circ_g.4


General Information
CircRNA Name Os11g0573000_circ_g.4
ID in PlantcircBase osa_circ_009658
Alias NA
Organism Oryza sativa
Position chr11: 21507188-21509084  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os11g0573000
Parent gene annotation Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family pr
otein. (Os11t0573000-01);Similar to Ubiquitin carboxyl-terminal
hydrolase family protein, expressed. (Os11t0573000-02)
Parent gene strand -
Alternative splicing Os11g0573000_circ_g.1 Os11g0573000_circ_g.2 Os11g0573000_circ_g.3 Os11g0573000_circ_g.5 Os11g0573000_circ_g.6 Os11g0573000_circ_g.7
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0573000-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAGTAGTCAGATGCTGACCTTTATGATGGTATAAAGATGAGCTTCAGCCTTCTCTTTCTTTTT
GTGTTCTTTCTCTTCTTGTTCTTTCTTCAACCTTACctgcctattatgaacatactccagatac
gaagggacatctggataacgcatttgagtgtcactatcaggtataggtgatttttggaaacaga
tgatgtcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCCTATTATGAACATACTCCAGATACGAAGGGACATCTGGATAACGCATTTGAGTGTCACTA
TCAGGTATAGGTGATTTTTGGAAACAGATGATGTCCCCATCTTCAAGCTACAATATTTGGAGCA
TTTTGCAAATCAATAAGTGTTTAATTCAAATTTGGCATTCCTTAACCAAAAGAAACATGTTATA
AACCTGACTAGCACGGAAAGTGGCTTTTTTGTCAATATGTTCACACATCACATTTGGCTCAAAT
TTAATTTCCTGCATGTACCAATGAAACACAACATAAGTACAGTCAACTTGGTAAGGCAGTCGAT
ATAAAACTTAGCAATTGCCACTCCAAAGATTGACACTTAATAATTTGCCACTGAACGCCAGACA
GATATCTGGACCTACTCCTAGAACACGCCTCAATGGAGTGACATATACTAGATTATCCCATAAA
TATAGCATCATGAATTTAGCTCTTGCCTCGTAGAGCTCAATTTCTTCATTTGGCACAAATCCAG
CCATTTCATTTAGTTTGGTCAAGATTTCTGAGGGTTTTCCCAAGGCCTTTACGAAGAGCCTCCC
CACAAAACTGCAATCAGTGAAAGAATGTTATGTGTCAGCCATTTGTGAAGGAATAAGGAAGAAT
GATAAGGTGTTAATCAAATAAATGTACCAGAGTTCTTCCTTTTCGGGATTATAGAGTTTGAAGA
ACAGAAGAATATCTTCCTTGCTCTTCTCAGGTGGAGGGAGAGGCCGCAAATCCTATAAATGATA
AAACAGACAACAATAAGTATCCTGCATAACCATAAGTATCAAACAGATAAACAAAGTTAAGTAT
CCTGCATCTAGAAGCCATAACAGACAACAATAAGTAAAAAACAGAAAAAGAAATGGTAGCAGCT
CCAGCACATCATTACCGGGCCAAGTTCTACTTCCAAAAACAACTTCAGCTCAGCATTGTGTGCC
TTATTCGATACCTCCCTCAGTTGTCCCACCTGTGCAGATACATATAAAAATGAACTGGAGATGA
TAAGAAAGAGAACAGAAGCAATAAACACACAATGGAAACAAGCAAGCTCATTGAAAGAAAAAAC
GTATAAGCTAAGTGCATGATCTTCTGATAACATGCATAACAAAGCACTCTCAGCAGAGAATCTA
TACAACAAAATACTCCAGAACTGCAACCTATATAAAAGAAAATTCTTAAGTGGGGAGTGAGAGA
AAGAGAGACAGGGGAAGATCGTAAGAACTCAATTGGACCTAAGGCTGTTAGATGAAATAATAAG
GTAAGATTAATTTCCAATTGAAGTGTGGGTTTAACAGTTTGCTTCCAACAATTGAAAGTGACTA
GCTTACAGATTGTGTTTCTTCATGAGGACTCAATGGACGATTAGGCCTGTATGTGTGGTTCTGC
CTCTTAGCCCACAACCAGAAGCGCTGAAATTGTACAGGGATGCCATACTCCTTTGCAACTTCCT
CCTATTAAACAATTTATTCAACAGAAGTTAAATTACCAGTTGATTTTACAGAAGCATGTGTACT
CGTATAGCAGAAATTTAGCATTCCAATGCTACGAACCAAGAACTTGTTTGCACACCTTACCTTG
AAAGTGGTAAACAGTAACTGCTTCTGAATTCGGAAGCTACGAACTTTTTCATGGTCCACCAGGT
CAAAATATATATCCTTGCCAATTTGCTCCTTCAAATTCTCATCTCGAGCCACCTAGATATATTT
GTCCAAACAGAGCACTATGAGAAACAGATTCACAGAGAGGTTCCAGACTGAGATGAAGTGATGA
ACATAATAGTAGTCAGATGCTGACCTTTATGATGGTATAAAGATGAGCTTCAGCCTTCTCTTTC
TTTTTGTGTTCTTTCTCTTCTTGTTCTTTCTTCAACCTTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.131122465
Functional Information
Coding potential Y
Potential coding position 21508839-21507262(+)
21507705-21507190(-)
21507293-21509083(-)
Potential amino acid sequence MVHQVKIYILANLLLQILISSHLYDGIKMSFSLLFLFVFFLFLFFLQPYLPIMNILQIRRDIWI
THLSVTIRYR*(+)
MAGFVPNEEIELYEEIKFEPNVMCEHIDKKATFRASQLEDGDIICFQKSPIPDSDTQMRYPDVP
SYLEYVHNRQVRLKKEQEEKEHKKKEKAEAHLYTIIKVARDENLKEQIGKDIYFDLVDHEKVRS
FRIQKQLLFTTFKEEVAKEYGIPVQFQRFWLWAKRQNHTYRPNRPLSPHEETQSVGQLREVSNK
AHNAELKLFLEVELGPDLRPLPPPEKSKEDILLFFKLYNPEKEELCFVGRLFVKALGKPSEILT
KLNEMAGFVPNEEIELYEEIKFEPNVMCEHIDKKATFRASQLEDGDIICFQKSPIPDSDTQMRY
PDVPSYLEYVHNRQVRLKKEQEEKEHKKKEKAEAHLYTIIKVARDENLKEQIGKDIYFDLVDHE
KVRSFRIQKQLLFTTFKEEVAKEYGIPVQFQRFWLWAKRQNHTYRPNRPLSPHEETQSVGQLRE
VSNKAHNAELKLFLEVELGPDLRPLPPPEKSKEDILLFFKLYNPEKEELCFVGRLFVKALGKPS
EILTKLNEMAGFVPNEEIELYEEIKFEPNVMCEHIDKKATFRASQLEDGDIICFQKSPIPDSDT
QMRYPDVPSYLEYVHNRQVRLKKEQEEKEHKKKEKAEAHLYTIIKVARDENLKEQIGKDIYFDL
VDHEKVRSFRIQKQLLFTTFKEEVAKEYGIPVQFQRFWLWAKRQNHTYRPNRPLSPHEETQSVG
QLREVSNKAHNAELKLFLEVELGPDLRPLPPPEKSKEDILLFFKLYNPEKEELCFVGRLFVKAL
GKPSEILTKLNEMAGFVPNEEIELYEEIKFEPNVMCEHIDKKATFRASQLEDGDIICFQKSPIP
DSDTQMRYPDVPSYLEYVHNRQ(-)
MGTSSVSKNHLYLIVTLKCVIQMSLRIWSMFIIGR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017