Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os12g0288600_circ_g.4 |
ID in PlantcircBase | osa_circ_011152 |
Alias | NA |
Organism | Oryza sativa |
Position | chr12: 11063753-11068521 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder |
Parent gene | Os12g0288600 |
Parent gene annotation |
Conserved hypothetical protein. (Os12t0288600-01) |
Parent gene strand | - |
Alternative splicing | Os12g0288600_circ_g.1 Os12g0288600_circ_g.2 Os12g0288600_circ_g.3 Os12g0288600_circ_g.5 Os12g0288600_circ_g.6 Os12g0288600_circ_g.7 Os12g0288600_circ_g.8 Os12g0288600_circ_g.9 |
Support reads | 1 |
Tissues | seed |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os12t0288600-01:4 |
Conservation Information | |
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Conserved circRNAs | osi_circ_003395* |
PMCS | 0.093793566 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
11064009-11063755(-) |
Potential amino acid sequence |
MDNSNKKSSDISYHGRITGTDTEVNHHVAGNSKTSDNDFGLASNQKVGESSHVGSASEKIVAEK GKSSSEPLDFDSLYPLTRLPKVSRSARRKKLKRQLRQKAKEQLKEKEHCQEQPTVADCPSSNNR DVLPSPSSNQNNSSLPFVRHEADEEESDTSDDIVPVVVRPGHIRFESAGGESDKSPVKEIQTTF QWSGTTSKKKGQKWGMDNSNKKSSDISYHGRITGTDTEVNHHVAGNSKTSDNDFGLASNQKVGE SSHVGSASEKIVAEKGKSSSEPLDFDSLYPLTRLPKVSRSARRKKLKRQLRQKAKEQLKEKEHC QEQPTVADCPSSNNRDVLPSPSSNQNNSSLPFVRHEADEEESDTSDDIVPVVVRPGHIRFESAG GESDKSPVKEIQTTFQWSGTTSKKKGQKWGMDNSNKKSSDISYHGRITGTDTEVNHHVAGNSKT SDNDFGLASNQKVGESSHVGSASEKIVAEKGKSSSEPLDFDSLYPLTRLPKVSRSARRKKLKRQ LRQKAKEQLKEKEHCQEQPTVADCPSSNNRDVLPSPSSNQNNSSLPFVRHEADEEESDTSDDIV PVVVRPGHIRFESAGGESDKSPVKEIQTTFQWSGTTSKKKGQKWGMDNSNKKSSDISYHGRITG TDTEVNHHVAGNSKTSDNDFGLASNQKVGESSHVGSASEKIVAEKGKSSSEPLDFDSLYPLTRL PK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |