Plant Circular RNA Database

Detail information of BGIOSGA036348_circ_g.2

			
						 General Information
					
						CircRNA Name
						BGIOSGA036348_circ_g.2
					
						ID in PlantcircBase
						osi_circ_003395
					
						Alias
						12:8888362|8891802
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr12: 8888362-8891802  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							BGIOSGA036348						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							BGIOSGA036348_circ_g.1 BGIOSGA036348_circ_g.3 BGIOSGA036348_circ_g.4 						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						BGIOSGA036348-TA:4

General Information
CircRNA Name	BGIOSGA036348_circ_g.2
ID in PlantcircBase	osi_circ_003395
Alias	12:8888362\|8891802
Organism	Oryza sativa ssp. indica
Position	chr12: 8888362-8891802 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	e-circRNA
Identification method	find_circ
Parent gene	BGIOSGA036348
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	BGIOSGA036348_circ_g.1 BGIOSGA036348_circ_g.3 BGIOSGA036348_circ_g.4
Support reads	NA
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	BGIOSGA036348-TA:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GATACAGACATATCCAGCAACAATTTACCTCTTTCAATTGTTCTTTGGCTTTCTGTCTAAGTTG
TCTTTTGAGTTTCTTACGCCGAGCACTTCTAGATACcttgggaagtcgtgttaggggatacagg
ctgtcaaaatctaaaggttcactgctagacttccctttcaaagcaaaaatcttttcacttgctg
atccaaca

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTGGGAAGTCGTGTTAGGGGATACAGGCTGTCAAAATCTAAAGGTTCACTGCTAGACTTCCCT
TTCAAAGCAAAAATCTTTTCACTTGCTGATCCAACATGACTGCTCTCACCAACCTTTTGATTAC
TGGCCAAACCAAAATCATTATCACTAGTCTTAGAGTTGCCAGCCACATGGTGGTTAACTTCAGT
GTCAGTTCCAGTTATCCTCCCATGATAGCTGATATCAGAGCTTTTCTTGTTTGAGTTGTCCATT
CCCCACTTCTGACCCTTCTTTTTGCTTGTAGTTCCACTCCACTGGAAAGTTGTCTGGAATAAGA
AAATCAAAACAATTACATACCAATTTGCATAATTTTACTAGTATTAATATATTTATTCAAGGGA
AGTAAATCACCACTTCTATTTAACTAATGAATAATTTATTTTAATTCAGGTTTCTTAAATTTCA
TCAACACTGCCTCAATTGGAATTAGATGACTAGATGTCGATTTAGTCAAAAGCACAATGACCAA
GGTGGATCTTAACTCTTTTACTTTTGACATGCTTACCCCTATCAAATGTGATTTATCTCTGAAT
AATGGTCCTCCATAGTACTGGTCACCAGCTATGATTTATCCAATCCTAGGGCAAGAGCATACTA
AAGTGTAGCTTTGCTCTTAAATAGCTGTCACCGGGTTCAATTGGATAAACAACATCAACACCTG
TTGCATTTTATAGGGCCTATTTCTGAAAATGAAACCTAGAAACTTAAAGGAAAAAGTACGAATT
ACCCCCCCCCCCAACCCGAAAACCAGATATGACTCACCCTGAACTTTCAATGACGGACGAATTA
CCCCCCTCGACCCAATCCAGAGCGGTTTTATCCTACGTGGCGTACGCGTGGCAACCCAGTCAGC
ATTTTTTTAAAAACATAGTGGGGCCCACCTGTCATATACTCTCTCCCTCTCCCGGCGAGCACGG
CAGCCCGGGGCAGCTCCAGCATCGTCGTAGTCGTGGCACACAGAGCCGGCAGAGTGGGATGCGG
AACCGGCGGCGGCAGCGTGGGATATAGAGCCAGCGGCGGCGCGGGGAAGGAAAAGGAGGAGAAA
GAGGAGAAAGAGGTGGGACCCGACGGCACACGTTGCCGGAGAGCACGGAGAGAGTGTGCGCCGA
GATCGGGGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTA
CTTTTGCACTCACAGTATATGACGTGGGCCTTCATGTGCTATGACATGTGGGCCCAGTGGCAAA
TCCTTAATTGCCACTTATAAGAGTGGCAAATAGTTAAATATCTCCCTAAAATGACATCTAAGTA
TCTAACAATTATGGAAGAAATATGCATTTACGTAGCCCCAAATATTTCCTAGTCAATCCACAAC
TACCCCCACAATCAAAGCTATCACTTCCCTAAAATATCTCTAAAAACAAATTCATAAAATGGAA
GTCACAACAAATTCTATTATTTACATGCTAATGAGCAGATAGCAAATATAGTGGAGGTGGAATA
TAAAATAAAGTCTTGATAATTTCATGCAGTGGCCTAACTTACTGACTGTTGCAAAGGAAATGCA
TCATTAAATCAGTTATTATATAATTAAGAATGAGAGACAAGAGGCACATCAATAAACCTGTATT
TCCTTCACCGGTGATTTATCTGATTCTCCGCCTAAAATCAAAAGAAAATTACTTTATATTGAGC
TGTCTTACATGCAATAAATGAATATTACCAACTGAAGATGTGTAGTGATGTGGGTAACACAATA
GTAATGATTCAACAAGAAAACTGTCATAGGTAGTGGGCCGAGGGGTCGAGGCCCAAGAACATAA
ATCAGAAAAGCACACAAGCCGGACATAAATAACAGCATAACAGTCTCAAATATTCACTTGTTTG
AAGACCTCTAAACAAGAATGCACAAAAGATGATTTCAGGTGCAAATCTCCGAGAGCTGTAGTAT
ACACATAATAAAATCCCCATAGGCTGCAAGAATATGAGATGGAGAGTTATATATGTACACTAGG
TTTAGCTGGGAATATAGGACTATTTCTCTTATTTATTTGCCAATAGAGCTCAAATTCCTGGTTT
TATTTTCAAATTCTCGGACCAGGAGCAGCATGGAATAGTTTGGATATGCTCCAACGCACCATTT
ACATCTATATAACGATAAATAGATTAATGGTTCAGAATACAATTTACTGGTGATTTTCAACCAA
AACATAATATTTTCAGTCTGGATATTCATGCATAAACAGCTAGAATTGTTCTTGGAGAAAAGAA
TGAAATGTTTTTATATATTTTTCACATACTTCTCTGTTTCAAGCATAAGGTAAGGCCAGAAAAA
GATGACCTTAAATTTTGAAGGTAGGACACAACTAGCACAGACAAATTAACCAGAGGAGAAGACC
TGAAGAATATTTCTAAAGATGCCACTATCAACATACCAAATATATGTGTTGTTTGATACATACA
AATGTCCTAATGCTTACATGTCTACTTGGACAAGTATGATGGCATTTGTGCATGGTAAATTAAC
ACGGTAGTCAGGGTAACTCTGGTTTATCTTTTTTTTTTCCTGAACAGGACAGTGTTTGTTTTCT
GTCTGTGATAAACAATGGATTGCAATGCGGAAAATAATATTATCATAAATCAGATTCTTGCTGG
ATGAAGATACCTGCTGACTCAAAGCGAATGTGGCCAGGCCTAACCACAACTGGAACAATATCAT
CCGATGTATCAGATTCTTCCTCATCTGCTTCATGCCTTACAAATGGCAAGCTCGAGTTGTTTTG
ATTGCTTGATGGGGACGGCAAAACATCTCGGTTGTTTGACGATGGACAATCAGCCACGGTTGGT
TGTTCTTGACAGTGCTCTTTCTGCAAAAATATAAATTGAAGATAAATATATTTGTTTAACACTA
TTTGTCCCTACTATGGAGATAAGACTATCAGGTAGCTACTCTGTTCTGAGCTGGAGGAAGAGAA
GTAGATGGATAGCAGCAAAAGATTCAGTATCAGAGGAAACAAGATTACAGGGAGTCGGAAAGCT
TTCATGCCACAGTGAGACATACCAATGAAGAAGGCAATGCCACAGTAGTGGAAACTTATAAAAG
CTGTACAATTTATGAAAAGAATAGAGTTTTCATTGGGGGAAAAAAAGAAGGAAGCCCATATGGG
ATTGCAACTTGAAAGTTGATTGAACCAGCCTATATATTTTCCAATTGTTGCAACCAATCCAGAT
GTTCTTCCATCTATAAAATCCACAGCATTATGCCCTTGTAGTAGGGATATAAAAATATCCTATA
AATCAAGAAATAAGATACAGACATATCCAGCAACAATTTACCTCTTTCAATTGTTCTTTGGCTT
TCTGTCTAAGTTGTCTTTTGAGTTTCTTACGCCGAGCACTTCTAGATAC
						
					

			
		

Sequences
Splice junction sequence	GATACAGACATATCCAGCAACAATTTACCTCTTTCAATTGTTCTTTGGCTTTCTGTCTAAGTTG TCTTTTGAGTTTCTTACGCCGAGCACTTCTAGATACcttgggaagtcgtgttaggggatacagg ctgtcaaaatctaaaggttcactgctagacttccctttcaaagcaaaaatcttttcacttgctg atccaaca
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTGGGAAGTCGTGTTAGGGGATACAGGCTGTCAAAATCTAAAGGTTCACTGCTAGACTTCCCT TTCAAAGCAAAAATCTTTTCACTTGCTGATCCAACATGACTGCTCTCACCAACCTTTTGATTAC TGGCCAAACCAAAATCATTATCACTAGTCTTAGAGTTGCCAGCCACATGGTGGTTAACTTCAGT GTCAGTTCCAGTTATCCTCCCATGATAGCTGATATCAGAGCTTTTCTTGTTTGAGTTGTCCATT CCCCACTTCTGACCCTTCTTTTTGCTTGTAGTTCCACTCCACTGGAAAGTTGTCTGGAATAAGA AAATCAAAACAATTACATACCAATTTGCATAATTTTACTAGTATTAATATATTTATTCAAGGGA AGTAAATCACCACTTCTATTTAACTAATGAATAATTTATTTTAATTCAGGTTTCTTAAATTTCA TCAACACTGCCTCAATTGGAATTAGATGACTAGATGTCGATTTAGTCAAAAGCACAATGACCAA GGTGGATCTTAACTCTTTTACTTTTGACATGCTTACCCCTATCAAATGTGATTTATCTCTGAAT AATGGTCCTCCATAGTACTGGTCACCAGCTATGATTTATCCAATCCTAGGGCAAGAGCATACTA AAGTGTAGCTTTGCTCTTAAATAGCTGTCACCGGGTTCAATTGGATAAACAACATCAACACCTG TTGCATTTTATAGGGCCTATTTCTGAAAATGAAACCTAGAAACTTAAAGGAAAAAGTACGAATT ACCCCCCCCCCCAACCCGAAAACCAGATATGACTCACCCTGAACTTTCAATGACGGACGAATTA CCCCCCTCGACCCAATCCAGAGCGGTTTTATCCTACGTGGCGTACGCGTGGCAACCCAGTCAGC ATTTTTTTAAAAACATAGTGGGGCCCACCTGTCATATACTCTCTCCCTCTCCCGGCGAGCACGG CAGCCCGGGGCAGCTCCAGCATCGTCGTAGTCGTGGCACACAGAGCCGGCAGAGTGGGATGCGG AACCGGCGGCGGCAGCGTGGGATATAGAGCCAGCGGCGGCGCGGGGAAGGAAAAGGAGGAGAAA GAGGAGAAAGAGGTGGGACCCGACGGCACACGTTGCCGGAGAGCACGGAGAGAGTGTGCGCCGA GATCGGGGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTA CTTTTGCACTCACAGTATATGACGTGGGCCTTCATGTGCTATGACATGTGGGCCCAGTGGCAAA TCCTTAATTGCCACTTATAAGAGTGGCAAATAGTTAAATATCTCCCTAAAATGACATCTAAGTA TCTAACAATTATGGAAGAAATATGCATTTACGTAGCCCCAAATATTTCCTAGTCAATCCACAAC TACCCCCACAATCAAAGCTATCACTTCCCTAAAATATCTCTAAAAACAAATTCATAAAATGGAA GTCACAACAAATTCTATTATTTACATGCTAATGAGCAGATAGCAAATATAGTGGAGGTGGAATA TAAAATAAAGTCTTGATAATTTCATGCAGTGGCCTAACTTACTGACTGTTGCAAAGGAAATGCA TCATTAAATCAGTTATTATATAATTAAGAATGAGAGACAAGAGGCACATCAATAAACCTGTATT TCCTTCACCGGTGATTTATCTGATTCTCCGCCTAAAATCAAAAGAAAATTACTTTATATTGAGC TGTCTTACATGCAATAAATGAATATTACCAACTGAAGATGTGTAGTGATGTGGGTAACACAATA GTAATGATTCAACAAGAAAACTGTCATAGGTAGTGGGCCGAGGGGTCGAGGCCCAAGAACATAA ATCAGAAAAGCACACAAGCCGGACATAAATAACAGCATAACAGTCTCAAATATTCACTTGTTTG AAGACCTCTAAACAAGAATGCACAAAAGATGATTTCAGGTGCAAATCTCCGAGAGCTGTAGTAT ACACATAATAAAATCCCCATAGGCTGCAAGAATATGAGATGGAGAGTTATATATGTACACTAGG TTTAGCTGGGAATATAGGACTATTTCTCTTATTTATTTGCCAATAGAGCTCAAATTCCTGGTTT TATTTTCAAATTCTCGGACCAGGAGCAGCATGGAATAGTTTGGATATGCTCCAACGCACCATTT ACATCTATATAACGATAAATAGATTAATGGTTCAGAATACAATTTACTGGTGATTTTCAACCAA AACATAATATTTTCAGTCTGGATATTCATGCATAAACAGCTAGAATTGTTCTTGGAGAAAAGAA TGAAATGTTTTTATATATTTTTCACATACTTCTCTGTTTCAAGCATAAGGTAAGGCCAGAAAAA GATGACCTTAAATTTTGAAGGTAGGACACAACTAGCACAGACAAATTAACCAGAGGAGAAGACC TGAAGAATATTTCTAAAGATGCCACTATCAACATACCAAATATATGTGTTGTTTGATACATACA AATGTCCTAATGCTTACATGTCTACTTGGACAAGTATGATGGCATTTGTGCATGGTAAATTAAC ACGGTAGTCAGGGTAACTCTGGTTTATCTTTTTTTTTTCCTGAACAGGACAGTGTTTGTTTTCT GTCTGTGATAAACAATGGATTGCAATGCGGAAAATAATATTATCATAAATCAGATTCTTGCTGG ATGAAGATACCTGCTGACTCAAAGCGAATGTGGCCAGGCCTAACCACAACTGGAACAATATCAT CCGATGTATCAGATTCTTCCTCATCTGCTTCATGCCTTACAAATGGCAAGCTCGAGTTGTTTTG ATTGCTTGATGGGGACGGCAAAACATCTCGGTTGTTTGACGATGGACAATCAGCCACGGTTGGT TGTTCTTGACAGTGCTCTTTCTGCAAAAATATAAATTGAAGATAAATATATTTGTTTAACACTA TTTGTCCCTACTATGGAGATAAGACTATCAGGTAGCTACTCTGTTCTGAGCTGGAGGAAGAGAA GTAGATGGATAGCAGCAAAAGATTCAGTATCAGAGGAAACAAGATTACAGGGAGTCGGAAAGCT TTCATGCCACAGTGAGACATACCAATGAAGAAGGCAATGCCACAGTAGTGGAAACTTATAAAAG CTGTACAATTTATGAAAAGAATAGAGTTTTCATTGGGGGAAAAAAAGAAGGAAGCCCATATGGG ATTGCAACTTGAAAGTTGATTGAACCAGCCTATATATTTTCCAATTGTTGCAACCAATCCAGAT GTTCTTCCATCTATAAAATCCACAGCATTATGCCCTTGTAGTAGGGATATAAAAATATCCTATA AATCAAGAAATAAGATACAGACATATCCAGCAACAATTTACCTCTTTCAATTGTTCTTTGGCTT TCTGTCTAAGTTGTCTTTTGAGTTTCTTACGCCGAGCACTTCTAGATAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osa_circ_011152* osa_circ_011149 						
					
						PMCS

Conservation Information
Conserved circRNAs	osa_circ_011152* osa_circ_011149
PMCS

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							8888618-8888364(-)
						
						Potential amino acid sequence
						
							MDNSNKKSSDISYHGRITGTDTEVNHHVAGNSKTSDNDFGLASNQKVGESSHVGSASEKIFALK
GKSSSEPLDFDSLYPLTRLPKVSRSARRKKLKRQLRQKAKEQLKEKEHCQEQPTVADCPSSNNR
DVLPSPSSNQNNSSLPFVRHEADEEESDTSDDIVPVVVRPGHIRFESAGGESDKSPVKEIQTTF
QWSGTTSKKKGQKWGMDNSNKKSSDISYHGRITGTDTEVNHHVAGNSKTSDNDFGLASNQKVGE
SSHVGSASEKIFALKGKSSSEPLDFDSLYPLTRLPKVSRSARRKKLKRQLRQKAKEQLKEKEHC
QEQPTVADCPSSNNRDVLPSPSSNQNNSSLPFVRHEADEEESDTSDDIVPVVVRPGHIRFESAG
GESDKSPVKEIQTTFQWSGTTSKKKGQKWGMDNSNKKSSDISYHGRITGTDTEVNHHVAGNSKT
SDNDFGLASNQKVGESSHVGSASEKIFALKGKSSSEPLDFDSLYPLTRLPKVSRSARRKKLKRQ
LRQKAKEQLKEKEHCQEQPTVADCPSSNNRDVLPSPSSNQNNSSLPFVRHEADEEESDTSDDIV
PVVVRPGHIRFESAGGESDKSPVKEIQTTFQWSGTTSKKKGQKWGMDNSNKKSSDISYHGRITG
TDTEVNHHVAGNSKTSDNDFGLASNQKVGESSHVGSASEKIFALKGKSSSEPLDFDSLYPLTRL
PK(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	8888618-8888364(-)
Potential amino acid sequence	MDNSNKKSSDISYHGRITGTDTEVNHHVAGNSKTSDNDFGLASNQKVGESSHVGSASEKIFALK GKSSSEPLDFDSLYPLTRLPKVSRSARRKKLKRQLRQKAKEQLKEKEHCQEQPTVADCPSSNNR DVLPSPSSNQNNSSLPFVRHEADEEESDTSDDIVPVVVRPGHIRFESAGGESDKSPVKEIQTTF QWSGTTSKKKGQKWGMDNSNKKSSDISYHGRITGTDTEVNHHVAGNSKTSDNDFGLASNQKVGE SSHVGSASEKIFALKGKSSSEPLDFDSLYPLTRLPKVSRSARRKKLKRQLRQKAKEQLKEKEHC QEQPTVADCPSSNNRDVLPSPSSNQNNSSLPFVRHEADEEESDTSDDIVPVVVRPGHIRFESAG GESDKSPVKEIQTTFQWSGTTSKKKGQKWGMDNSNKKSSDISYHGRITGTDTEVNHHVAGNSKT SDNDFGLASNQKVGESSHVGSASEKIFALKGKSSSEPLDFDSLYPLTRLPKVSRSARRKKLKRQ LRQKAKEQLKEKEHCQEQPTVADCPSSNNRDVLPSPSSNQNNSSLPFVRHEADEEESDTSDDIV PVVVRPGHIRFESAGGESDKSPVKEIQTTFQWSGTTSKKKGQKWGMDNSNKKSSDISYHGRITG TDTEVNHHVAGNSKTSDNDFGLASNQKVGESSHVGSASEKIFALKGKSSSEPLDFDSLYPLTRL PK(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Huang et al., 2021

circRNA

Detail information of BGIOSGA036348_circ_g.2

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