Detail information of Os03g0262300_circ_g.4


General Information
CircRNA Name Os03g0262300_circ_g.4
ID in PlantcircBase osa_circ_018980
Alias NA
Organism Oryza sativa
Position chr3: 8586730-8591431  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0262300
Parent gene annotation Hypothetical conserved gene. (Os03t0262300-01)
Parent gene strand -
Alternative splicing Os03g0262300_circ_g.3 Os03g0262300_circ_g.5 Os03g0262300_circ_g.6 Os03g0262300_circ_g.7 Os03g0262300_circ_g.8 Os03g0262300_circ_g.9 Os03g0262300_circ_g.10
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0262300-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATATGATTCGTACTGCCAATATGTAGAATAAATTGTGATGTTTACCTGTGCAGCAGTTTCAGGC
CGGTACTTGTCAGTCCATAGGTTAGCTGTCTGACAGctgagtattgctgcttgccttgatacca
aaactgtaaaagcatcattgttctcctaatatcacctaaaaaggcatcaattatatgcttctgt
tgaggaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAGTATTGCTGCTTGCCTTGATACCAAAACTGTAAAAGCATCATTGTTCTCCTAATATCACC
TAAAAAGGCATCAATTATATGCTTCTGTTGAGGAACAGTGATTTCTACTCCTTCAGACTTGCAT
ATCTGCACGAAAACATGGTATGGTCATCGTTCAATAATTGCAGAAAGCAGCATAGTTTTTTGGT
ATTTCAGCCTAGAACTAATTTGTTTTTACCATGTCGACATGTGAAAGTAACTCTGCAGATGATG
GGTATGTGAAATCCAATACTAGCTGAGCCAAGAGATGAGGCAATGGCGGATCTTTCTCTTCAGG
AAATATAAAGACAAAAACAACAAAATAACAAGAGCTTTAGTATGCTCTTAATCAAATGAAATTT
CGAAGGATGGTAGAGATGTACAAAATCCTAAAGACAAAAAGGCTTACTGTTACTGGTCAGTATG
ATTGGCCATTTTGTAGTCTCCACCATCTTAAGTATAGTTGAAATAAATCCACGGTCCTCATCAA
AAACAGTATCTACATCTTCAAATAGGATGAGGGTCTTGTTAATGACTTGTTTGTATTCAGCCGT
GCCAGGAGTCCCTGAAGCTGGATCTAAGGAATTGCTTATTGGTAAACCGATGATCTCCTCTTGT
GACCTGCATGGGAAACCAAAAGATACTTCTGAGGTTGTCTCAAACATGCAAATTTGAAAAGTTT
GAGACAAGAATGCTTGGATTGTCATTTAAACTGCACTTCGCTATGCATCTAGTTGGCAAGAAAA
CAAAGAGCAAACTTCATAAGAACTGTAAACAACTATCTTATGTTTTTTTTGGTTTGCACGTGTT
GTTCCCCAAAACCAACATCCTTTTGTTCTTATCATCTAGTTGGTTGAGAAAAATCAGTCGTAGC
CACATTAGAGATCACGCTTGTCTATCCCAGATTATGTTAGGCATTAACGCCGTCGAATAGTAGT
CAATTTTACGAAGTAAATATGAGGAAAGTTCTTTTAAATACAAATGTGGGGAAAGGTTGATCGA
GACACTGGTTATATATGTTTCGTCCTCCTATATAACCCAAAATCTTGCGTGTGAATATATTTAT
GGAGTTTACAAGAAGGGGCACTCTCTAGTCAGAAACTAAGAATGAACACTCCGGTACTTGTCAA
TAAACGGTCATAAGATGACAGTTGTTGATATAAAGGTGTCTCCAAACTGGCAACTGTTGAGTGA
TTCTTGCCAGTGACCCATGTTGTGCAGACACTGGCTGTTGATGAGCACTCCATGGGGGTCTACG
GTAGGCTCATGGACTCCACCAGATCCCTAGCTCTACGTGTGCCAGGCCAGGATAATAGATTGAA
ACATATTATAATAAAGTGATTTTTTTTCAGCTGCAAAACTCAATGGACATGTGCCTAATGACGG
AGGCAGGAGATGTAGGACCTATCTCTGTTACTCTGTATAAGAGGTAAGGTAGATTCGGTTATCT
CATAAGCAAGAAAAAAGAAATAAAAAAATCTCCCAGATCCATGGTCTTATATTTCTCCTAAGCT
CCTTAACTTTCAAGTCATCACAACCCAGCCTATTTATGTGCAGTACTTACCCCCATTAACTATG
GTTCATAACACAGATACAACATGACCAGGATAAAGAAGGAAAATCAACATAATTATCATCATAA
ATATGAACAGTGATAACTTGGACAATAAATTGCACAGACCATTTTTCTAGACCATGTGATTTAG
TTGCTTCCTCGAACTTCTGCCTTACATAAGCCCCATTTCTCATATCGGATGTATTTACCTAGAA
AAACGTCACAAACTTCCATCAGAATAAAAAAATCAAGCTTTAGAAATCAGAGTTGAAATTTCAG
GAATAAATTTTGCTGAAGTACTGTAAACTAGGTAACGAGAATACTCAGAATTCTGTTCATGTCC
CATGTCCTAGTTTTCTCTAAAATGAAAGCACTGCATTTTGAATAGCATGTGTCCATAATTCCAT
ATTAACATAACATTTTTACTGACTGTAACCTATAAAAACCTATAACCCCTGACACTACTGCATT
TTTACAATCAAGTATGTCTGGAACAAGTTCAAGATTATACTTTAGAATATATCCAAACATAAGG
ATGAAGACAGAACCGATTATAGGCCATGGACCTTTACTTAGCCTTTTATCATATGTTAGCTTGA
TTAGACCAACAGACAAATCATAAATGCATAACTCAAATAATCAGGTGGTAGAGAACCTTAAGTT
TTGTCTGTGCTTACTAGACAATGAAGTTTGATTACGCTTAGAGAACTAGACATGATTATGAACT
TGATGTCATCATTATGGATATGAGCTAGCTAAGTGCCTCATAATAATAACGAAATTCCATAGTA
GCTAAAGCAAGACTGATCCACACCAGTATGGGTGCGCATGGAGGTGGTTATGTTAGCATTTCTC
ATATATACAAACGAAACCCAAATAACCAAGCCAGGTGACACCTCATAGCGAGCAAAAAAAAATG
GATTTCAGCTAATTTCTGGGCATCACCATATCTTAACAAAGTCGAGTTCAAATAAGCACATTCC
ACAATATCAGTATAACTAAAACCCTCCTTGAATTCAAAACATGAGACCCAACCCAAGAGGGGCG
AGTTGAGCCCAACTTTAGCCCATGCATGTGGGCGTGAGTGCATGGTAGAATAGTACCATCTTGC
TAGTTTAACGAGTGATGTACCAACATATATACCAAGTACCAAAACACTTCAACCCCCATGTAAC
CCTTTTACACGAAGCAAAGACAAATGCATAAGCTAAGGTTTGTGTGAGCGGTGTAATCTACCCA
AAATGGGATTAGGCTCAATTTCAATGAGATCTTTCAGTTTCTTCTGCCAGAAGCTCCCCCAAAC
AGCGCCATATTTTATATGTTCAAAATTATTTATTCCTCTATACATAGAGTACCTTGAATGTGCA
GAAATGGATATAATAGAATTTCTATTCATATGAACAAATACTCTAGTGGGAATGTACTTGATGC
TAGGATGACTGGAGTCATGAAGCTTGTCAGGTTTCAGATCCAGGGTTTGAGCAAGAAGCTTGTT
GTGCGGTAAGAATGGGAACACAACTGTTTTGGGCATATTAAGCTGGTCGTGTCAAGAGAGGGAT
GGAAAAGCATATACTAAATCACCCTTAGATTTTTCATGTTCCTAAGGGAGGAACATGTGTGTGT
TGTACTCCCTCCATCTACTTTTGATAGTCATATTTCATCTTGACACACAGAACAATGATAAGTG
GTTCTACTTATCATTCATTTAAATATGCTACTAGTCATTCCTCGTAAACAAGCGATTCATTAAT
ATTTACATTTCTCGATGCCCATGTAGCTAATCTTGTGTGGAAGAATGGAGAGTCACGCATTAAA
TCCAAGAAAGCCATTAAGATGATAAGTTGTTAGATTGAAATATGCCTATCAAAAATAAATTTTT
CAGATTTGGAAATATGCCTATCAAAAGTAGATGGAGGGAGTATATAAATAAAGGACTTCCAATA
CAGTATTATCATTTTTACAGCATTTTAATGTTACAAAAAAGTCCCGAATTGGTAGATATTGTAG
AGAAAAACAGGCGAAAAGGAAAGAAGAAGCTGAAAGGATTCATCAAGCCAAAATATATTAGTAT
CTTAGTACACAAATAATATAGGAATATGGAAGCTCTTACAAGGTAGAGAAAAATGGAATTCCAG
ACAATACCTCAATTACATTGAATCCTTGTTCTCTCGCACATGCAAAAACTGCGGCTGATTTTCC
ACACTGTAAAAATGAACAAAGAGAATGAAGAAGCAGCTTTGCAGCTGGGAACAAAACTGATTGC
TTATAGGTTGGTACACCTTTTTTTTCAAGTACAGCATACAAAAATATATAATAGAATACTATAG
GAGCATCAATTGATTGCAGCCAGTAATCTTATGTTACCACACCTTCATGTGGAGAAAAAAGTGG
TCGAAAACTTACTATTCTGCCTAGACGTAGCTTAGTACTTTCAAACGTACAGACCAATTCAAAT
TCCCGACAAGTTCCAGGGGGTGTAAAAATTATTGTCCCGAGCTCAAACAAATAAGATAAGGCTC
CCCCCCCCTCTTCCCCTCTCACACACACAAACCCCCCACAAAACACACACGCACGCGAACACAC
AAGGAGATGATGCCCAGCAAATTCAAAAGAAAAAACAAAACAATACGTGAAGCATACAATGCAA
ACGGCAAGTAATCTTCAAAATGGAACTCACCCCAACTGGTCCAGTAATTAGAAGCACATTCTCA
TAATCAGAAGCATCTTCTGAATAATCTGTATCAGAACCATCTTGACAGGATCTACCATTCATGC
TCCCGTTAGTAACTATATTCTGTTTATTTCTGTGACCTCTTTCATCCCACCCTTTAAGCCACTC
ATTGAGGAATTTTACATGCTTGGAATTACCACAAACCTGATCAACCAAGATAAAATAGTAATCT
CAGAGCAAGTATAACCATATCTGAAGGTATTATTTTGTGAGTTCATAAAAATAGCATGTTGGCT
AAAAAACCTGATCAAATAGAAACAATTGGAAACAGGCAGCGAGATTTTATTATGAAATATATGA
TTCGTACTGCCAATATGTAGAATAAATTGTGATGTTTACCTGTGCAGCAGTTTCAGGCCGGTAC
TTGTCAGTCCATAGGTTAGCTGTCTGACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.096660524
Functional Information
Coding potential Y
Potential coding position 8591081-8591159(-)
Potential amino acid sequence MNGRSCQDGSDTDYSEDASDYENVLLITGPVGCGKSAAVFACAREQGFNVIEVNTSDMRNGAYV
RQKFEEATKSHGLEKWSQEEIIGLPISNSLDPASGTPGTAEYKQVINKTLILFEDVDTVFDEDR
GFISTILKMVETTKWPIILTSNKKDPPLPHLLAQLVLDFTYPSSAELLSHVDMICKSEGVEITV
PQQKHIIDAFLGDIRRTMMLLQFWYQGKQQYSAVRQLTYGLTSTGLKLLHRFVVIPSM*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017