Detail information of Os03g0114300_circ_g.9


General Information
CircRNA Name Os03g0114300_circ_g.9
ID in PlantcircBase osa_circ_017592
Alias NA
Organism Oryza sativa
Position chr3: 804963-806469  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0114300
Parent gene annotation Serine/threonine protein kinase domain containing protein. (Os03
t0114300-01);Similar to ATP binding protein. (Os03t0114300-02)
Parent gene strand +
Alternative splicing Os03g0108800_circ_ag.1 Os03g0109300_circ_g.1 Os03g0109300_circ_g.2 Os03g0109300_circ_g.3 Os03g0109300_circ_g.4 Os03g0109400_circ_g.1 Os03g0109400_circ_g.2 Os03g0109400_circ_g.3 Os03g0109400_circ_g.4 Os03g0109400_circ_g.5 Os03g0109400_circ_g.6 Os03g0109600_circ_g.1 Os03g0109600_circ_g.2 Os03g0109900_circ_g.1 Os03g0109900_circ_g.2 Os03g0109900_circ_g.3 Os03g0109900_circ_g.4 Os03g0109900_circ_g.5 Os03g0109900_circ_g.6 Os03g0110400_circ_g.1 Os03g0110400_circ_g.2 Os03g0110400_circ_g.3 Os03g0110400_circ_g.4 Os03g0110400_circ_g.5 Os03g0110500_circ_g.1 Os03g0110900_circ_g.1 Os03g0111100_circ_g.1 Os03g0111100_circ_g.2 Os03g0111100_circ_g.3 Os03g0111100_circ_g.4 Os03g0111100_circ_g.5 Os03g0111100_circ_g.6 Os03g0111100_circ_g.7 Os03g0111100_circ_g.8 Os03g0111100_circ_g.9 Os03g0111100_circ_g.10 Os03g0111100_circ_g.11 Os03g0111200_circ_g.1 Os03g0111200_circ_g.2 Os03g0111200_circ_g.3 Os03g0111400_circ_g.1 Os03g0111400_circ_g.2 Os03g0111500_circ_g.1 Os03g0111500_circ_g.2 Os03g0111500_circ_g.3 Os03g0111600_circ_g.1 Os03g0111600_circ_g.2 Os03g0111700_circ_g.1 Os03g0111700_circ_g.2 Os03g0111800_circ_g.1 Os03g0112101_circ_g.1 Os03g0112101_circ_g.2 Os03g0112101_circ_igg.1 Os03g0112101_circ_ig.1 Os03g0112101_circ_ig.2 Os03g0112101_circ_ig.3 Os03g0112101_circ_ig.4 Os03g0112101_circ_ig.5 Os03g0112101_circ_ig.6 Os03g0112101_circ_ig.7 Os03g0112101_circ_ig.8 Os03g0112400_circ_g.1 Os03g0112400_circ_igg.1 EPlOSAG00000048437_circ_ig.1 EPlOSAG00000048437_circ_ig.2 Os03g0112600_circ_ig.1 Os03g0112700_circ_g.1 Os03g0112700_circ_g.2 Os03g0112700_circ_g.3 Os03g0112700_circ_g.4 Os03g0112700_circ_g.5 Os03g0112700_circ_g.6 Os03g0112700_circ_g.7 Os03g0112800_circ_g.1 Os03g0112800_circ_g.2 Os03g0113500_circ_g.1 Os03g0113500_circ_g.2 Os03g0113500_circ_g.3 Os03g0113500_circ_g.4 Os03g0113500_circ_g.5 Os03g0113700_circ_g.1 Os03g0113800_circ_g.1 Os03g0113800_circ_g.2 Os03g0113800_circ_g.3 Os03g0113800_circ_g.4 Os03g0113800_circ_g.5 Os03g0113800_circ_g.6 Os03g0113800_circ_g.7 EPlOSAG00000003330_circ_ig.1 Os03g0114000_circ_g.1 Os03g0114300_circ_g.1 Os03g0114300_circ_g.2 Os03g0114300_circ_g.3 Os03g0114300_circ_g.4 Os03g0114300_circ_g.5 Os03g0114300_circ_g.6 Os03g0114300_circ_g.7 Os03g0114300_circ_g.8 Os03g0114300_circ_g.10 Os03g0114300_circ_g.11 Os03g0115100_circ_g.1 Os03g0115400_circ_g.1 Os03g0115400_circ_g.2 Os03g0115400_circ_ig.1 Os03g0115700_circ_g.1 Os03g0116000_circ_g.1 Os03g0116000_circ_g.2 Os03g0116300_circ_g.1 Os03g0116300_circ_g.2 Os03g0116300_circ_g.3 Os03g0116300_circ_g.4 Os03g0116300_circ_g.5 Os03g0116300_circ_g.6 Os03g0116400_circ_g.1 Os03g0116400_circ_g.2 Os03g0116700_circ_g.1 Os03g0116700_circ_g.2 Os03g0116900_circ_igg.1 Os03g0117100_circ_g.1 Os03g0117100_circ_g.2 Os03g0117100_circ_g.3 Os03g0117100_circ_g.4 Os03g0117800_circ_g.1 Os03g0117800_circ_g.2 Os03g0118400_circ_g.1
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0114300-02:5
Os03t0114300-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCACATCCAGCCATCAAGTGTCATGACTTGAGTTGCTCAGGGATCTTCACTGAGAAAATCAGCC
AGCGTTGGTCATTGGCCGGTGGATGCTAAGCCAATGtgaacaaacttgtgtcactgcagtaagt
ccaggggggaatatgcatgagacaagcagaggattggtttctgaacctggtgatgctgatagtg
aaaggaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 616
Transcript exons: 804963-805244,805750-805883,806067-806161,806255-806299,
806410-806469
TGAACAAACTTGTGTCACTGCAGTAAGTCCAGGGGGGAATATGCATGAGACAAGCAGAGGATTG
GTTTCTGAACCTGGTGATGCTGATAGTGAAAGGAAAGTTGATGGATATAGAAAACAAGGGTCAG
AAAACGAATCGTTACCCTCTACATCAAAACATGATTCTGAAGGACAAAACAGTAGTAGTGAAGT
TAAACAAAAAGAAAGGACTTGCTCTGGCCCAATTCTGTGTTCTGGTGTACATAATAAATCAATA
ACTGAAAGCAGTCGCATTTTTGATAGGGAAGCGGCAGTTAAGTTGGCATCTGATAAACAAAAGA
GTTGTACAAAAAGAACCACAAATCTCAGTGGTCCTCTTGCACTCCCTACTCGTGCTTCTGCAAA
TAGTCTGTCTGCTCCTATTCGGTCTTCTGGAGGCTATGTGGGCTCCTTGGGAGATAAGTCTAAG
CGTAGTGTGGTGGAGATAAAAGGACGTTTTTCAGTGACATCTGAGAATGTGGATCTTGCAAAGG
TTCAGGAAGTTCCAACAAGCGGCATTTCACGCAAATTACAGGAGGGATCTTCACTGAGAAAATC
AGCCAGCGTTGGTCATTGGCCGGTGGATGCTAAGCCAATG

Genomic sequence TGAACAAACTTGTGTCACTGCAGTAAGTCCAGGGGGGAATATGCATGAGACAAGCAGAGGATTG
GTTTCTGAACCTGGTGATGCTGATAGTGAAAGGAAAGTTGATGGATATAGAAAACAAGGGTCAG
AAAACGAATCGTTACCCTCTACATCAAAACATGATTCTGAAGGACAAAACAGTAGTAGTGAAGT
TAAACAAAAAGAAAGGACTTGCTCTGGCCCAATTCTGTGTTCTGGTGTACATAATAAATCAATA
ACTGAAAGCAGTCGCATTTTTGATAGGTAAGCCTTTCACTGTTTTTTTTTCCTATTCCAATTTT
AATATTACTTGGCTGCTACAATGTTGTGCATACCAATAATTTAATGCATGTTTTTTTTGGACTT
TCCTGTTTGAAATATTACATATGAATATGCCTCAGAAATGAAACGGTACAGTTTAAGATGCTTT
TTTCCCCCTTAAAATCGGCTAATATTTGAGCTTTCAAGTGTCGTTAGTTCTTAAATGTTTGACT
TAGGTCATGCAATAATTGATTTTATAGAAACAAATTAGTAGTTATTCTTCTTGAATTTGTATAC
CTGAGTTTCCTGTGAGTACTGTTATGAAGTTAGGAGGTTTCATAATTTTTTTGCTGAAACAAAT
TGCTCAAAAAGGCATTTGCATACCTGAGTTTCCTGTGAGTACTGTTATGAAGTTAGGAGGTTTC
ATAATTTTTTTGCTGAAACAAATTGCTCAAAAAGGCATTTGCATTTTAAAAGCACTTTTGGTTA
TTGTTATTCCTTGCTGCAGGGAAGCGGCAGTTAAGTTGGCATCTGATAAACAAAAGAGTTGTAC
AAAAAGAACCACAAATCTCAGTGGTCCTCTTGCACTCCCTACTCGTGCTTCTGCAAATAGTCTG
TCTGCTCCTATTCGGTCTTCTGGAGGTAGGAAGCAGCCAGTACTTTTTTGGATGCACATGATAA
ACAGCAGTCACGTGTTAATATTATTAACATAGCAAATGACCACATTTAAGGTTTACAGACTTTT
GTAACATAAATTAGATCATTTGAATTCACTGTGGTTATGAACTGAAGGAAAGTATATGATTATC
TGCCTGTTATTTGCAGGCTATGTGGGCTCCTTGGGAGATAAGTCTAAGCGTAGTGTGGTGGAGA
TAAAAGGACGTTTTTCAGTGACATCTGAGAATGTGGATCTTGCAAAGGTAGGTTTCGTTCTGAG
CATACACTTCAATAGGTTGTGCTCCAGACTGAGCAAGATCACTACAAGGGATACTAATTAAAAT
CTTACTTGACAGGTTCAGGAAGTTCCAACAAGCGGCATTTCACGCAAATTACAGGAGGTAAGAA
TTTGTGCCCTATCCATTTTATTGAAAGCTCTGTTGTACTCTACAGTCTACACTACTTCAAAACC
CACATCCAGCCATCAAGTGTCATGACTTGAGTTGCTCAGGGATCTTCACTGAGAAAATCAGCCA
GCGTTGGTCATTGGCCGGTGGATGCTAAGCCAATG
Conservation Information
Conserved circRNAs NA
PMCS 0.213484804
Functional Information
Coding potential Y
Potential coding position 806457-804962(+)
805237-806430(-)
Potential amino acid sequence MLSQCEQTCVTAVSPGGNMHETSRGLVSEPGDADSERKVDGYRKQGSENESLPSTSKHDSEGQN
SSSEVKQKERTCSGPILCSGVHNKSITESSRIFDREAAVKLASDKQKSCTKRTTNLSGPLALPT
RASANSLSAPIRSSGGYVGSLGDKSKRSVVEIKGRFSVTSENVDLAKVQEVPTSGISRKLQEGS
SLRKSASVGHWPVDAKPM*(+)
MRLLSVIDLLCTPEHRIGPEQVLSFCLTSLLLFCPSESCFDVEGNDSFSDPCFLYPSTFLSLSA
SPGSETNPLLVSCIFPPGLTAVTQVCSHWLSIHRPMTNAG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017