Detail information of Os11g0266800_circ_g.7


General Information
CircRNA Name Os11g0266800_circ_g.7
ID in PlantcircBase osa_circ_009042
Alias NA
Organism Oryza sativa
Position chr11: 9168273-9168921  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0266800
Parent gene annotation Tetratricopeptide-like helical domain containing protein. (Os11t
0266800-01)
Parent gene strand -
Alternative splicing Os11g0266800_circ_g.1 Os11g0266800_circ_g.2 Os11g0266800_circ_g.3 Os11g0266800_circ_g.4 Os11g0266800_circ_g.5 Os11g0266800_circ_g.6 Os11g0266800_circ_g.8 Os11g0266800_circ_g.9
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0266800-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAGATCCAGATGATTCGAGTCGATGTTTGTAGTTTGAGCATTCACATAATCCTCCAATAAATT
AATAGCTTTATCAATTTGACCACAGTCCCTGTACATatcattatgaacagcaacatcttcaatc
atcaggtaaaactttattgcatactcatattgtcctaaattttcgagagtgctagcaacctcct
tgatcaca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 405
Transcript exons: 9168273-9168419,9168664-9168921
ATCATTATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCT
AAATTTTCGAGAGTGCTAGCAACCTCCTTGATCACATCGGTGTTATCTTTTGAACGCTCCAGAT
GCACATTCTGAAGAAACACCTCGGCATGCTTCATATCTCCAAGATAAGCATGGCAGATTACAGC
TTTTGCCTGCAATTGTACTGGCAAATTGTGTTGAGATCCAAACACTATATGTGCTCTCTCAATC
AGCCTCAATGCTTCATTATAGGCATTATTTCTCAGATAAAGGGATATCAGTAGATCCAGATGAT
TCGAGTCGATGTTTGTAGTTTGAGCATTCACATAATCCTCCAATAAATTAATAGCTTTATCAAT
TTGACCACAGTCCCTGTACAT

Genomic sequence ATCATTATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCT
AAATTTTCGAGAGTGCTAGCAACCTCCTTGATCACATCGGTGTTATCTTTTGAACGCTCCAGAT
GCACATTCTGAAGAAACACCTGCACAAGTAATACCAATTCAATAACTAAGAAACTCAAAACTAT
ACGTTGAAGTAGTCTTGGATACAGTATATACACAAGCACAATCTAATCTTGCAGAGTACAACCT
GTTATCAGAGCAATTTATAGTCATATCGAGGATTTATAGTGTCTAATAAACCAATGGTAGCAAA
AGGTGGGTTTTGACTAATCAAGGATAAATTATGTCAAGTGTGTGCTATAATGGAACAGAACTGG
GACAAACCTCGGCATGCTTCATATCTCCAAGATAAGCATGGCAGATTACAGCTTTTGCCTGCAA
TTGTACTGGCAAATTGTGTTGAGATCCAAACACTATATGTGCTCTCTCAATCAGCCTCAATGCT
TCATTATAGGCATTATTTCTCAGATAAAGGGATATCAGTAGATCCAGATGATTCGAGTCGATGT
TTGTAGTTTGAGCATTCACATAATCCTCCAATAAATTAATAGCTTTATCAATTTGACCACAGTC
CCTGTACAT
Conservation Information
Conserved circRNAs NA
PMCS 0.278991885
Functional Information
Coding potential Y
Potential coding position 9168923-9168275(-)
9168294-9168866(-)
Potential amino acid sequence MYRDCGQIDKAINLLEDYVNAQTTNIDSNHLDLLISLYLRNNAYNEALRLIERAHIVFGSQHNL
PVQLQAKAVICHAYLGDMKHAEVFLQNVHLERSKDNTDVIKEVASTLENLGQYEYAIKFYLMIE
DVAVHNDMYRDCGQIDKAINLLEDYVNAQTTNIDSNHLDLLISLYLRNNAYNEALRLIERAHIV
FGSQHNLPVQLQAKAVICHAYLGDMKHAEVFLQNVHLERSKDNTDVIKEVASTLENLGQYEYAI
KFYLMIEDVAVHNDMYRDCGQIDKAINLLEDYVNAQTTNIDSNHLDLLISLYLRNNAYNEALRL
IERAHIVFGSQHNLPVQLQAKAVICHAYLGDMKHAEVFLQNVHLERSKDNTDVIKEVASTLENL
GQYEYAIKFYLMIEDVAVHNDMYRDCGQIDKAINLLEDYVNAQTTNIDSNHLDLLISLYLRNNA
YNEALRLIERAHIVFGSQHNLPVQLQAKAVICHAYLGDMKHAEVFLQNVHLERSKDNTDVIKEV
ASTLENLGQYEYAIKFYLMIEDVAVHND(-)
MLLFIMICTGTVVKLIKLLIYWRIM*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017