Detail information of Os10g0160000_circ_g.4


General Information
CircRNA Name Os10g0160000_circ_g.4
ID in PlantcircBase osa_circ_006257
Alias Os_ciR6952
Organism Oryza sativa
Position chr10: 3833594-3834089  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os10g0160000
Parent gene annotation Similar to Ubiquitin carboxyl-terminal hydrolase 12 (EC 3.1.2.15
) (Ubiquitin thiolesterase 12) (Ubiquitin-specific processing pr
otease 12) (Deubiquitinating enzyme 12). (Os10t0160000-01);Simil
ar to Ubiquitin carboxyl-terminal hydrolase. (Os10t0160000-02)
Parent gene strand -
Alternative splicing Os10g0160000_circ_g.1 Os10g0160000_circ_g.2 Os10g0160000_circ_g.3 Os10g0160000_circ_g.5 Os10g0160000_circ_g.6 Os10g0160000_circ_g.7 Os10g0160000_circ_g.8
Support reads 2/1
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0160000-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAACTGTTGAGGGCAATGGCAGTGACAAGTACATGAATGGGTCAAATGTAACTGAGATTTTCTT
ACAATCTGGGCAAACCAAAGTGGACTTGTACTGACCctatcaaccacccgatgcaggatctcta
ccctcaagagattttcagagccaaccggtagcctgtaagcaacaagtttgtcttcatcttttac
atgacaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 404
Transcript exons: 3833594-3833739,3833832-3834089
CTATCAACCACCCGATGCAGGATCTCTACCCTCAAGAGATTTTCAGAGCCAACCGGTAGCCTGT
AAGCAACAAGTTTGTCTTCATCTTTTACATGACAAAGTGGTTCTGATGGGTTCCAATAGCGGTA
AATCCGATGATCATATACCTCTGCAAGTAACAGTGTTTCGCAACTTTGTAAGCAACACATAACA
CTCAGAGATTTTATAAGATCTCCACAAACTCCATTCTTTTGTACCTTCACAGTGTAAGGCATGG
GAAGGGCATCTCCAGTACCACTAAATACAGTTACATTAATCATGCGAGTAACTGTTGAGGGCAA
TGGCAGTGACAAGTACATGAATGGGTCAAATGTAACTGAGATTTTCTTACAATCTGGGCAAACC
AAAGTGGACTTGTACTGACC

Genomic sequence CTATCAACCACCCGATGCAGGATCTCTACCCTCAAGAGATTTTCAGAGCCAACCGGTAGCCTGT
AAGCAACAAGTTTGTCTTCATCTTTTACATGACAAAGTGGTTCTGATGGGTTCCAATAGCGGTA
AATCCGATGATCATATACCTAAAGAATATGATGTTTATTAGCTATTTACTGAAAAAGAGTTATG
CTTCAAATAACACCATTGCTACATAAGAACAAACTGGATTTTTTACCTCTGCAAGTAACAGTGT
TTCGCAACTTTGTAAGCAACACATAACACTCAGAGATTTTATAAGATCTCCACAAACTCCATTC
TTTTGTACCTTCACAGTGTAAGGCATGGGAAGGGCATCTCCAGTACCACTAAATACAGTTACAT
TAATCATGCGAGTAACTGTTGAGGGCAATGGCAGTGACAAGTACATGAATGGGTCAAATGTAAC
TGAGATTTTCTTACAATCTGGGCAAACCAAAGTGGACTTGTACTGACC
Conservation Information
Conserved circRNAs osi_circ_002744*
PMCS 0.391706468
Functional Information
Coding potential Y
Potential coding position 3834025-3833983(-)
Potential amino acid sequence MYLSLPLPSTVTRMINVTVFSGTGDALPMPYTVKVQKNGVCGDLIKSLSVMCCLQSCETLLLAE
VYDHRIYRYWNPSEPLCHVKDEDKLVAYRLPVGSENLLRVEILHRVVDRVSTSPLWFAQIVRKS
QLHLTHSCTCHCHCPQQLLA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017