Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0160000_circ_g.4 |
ID in PlantcircBase | osa_circ_006257 |
Alias | Os_ciR6952 |
Organism | Oryza sativa |
Position | chr10: 3833594-3834089 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os10g0160000 |
Parent gene annotation |
Similar to Ubiquitin carboxyl-terminal hydrolase 12 (EC 3.1.2.15 ) (Ubiquitin thiolesterase 12) (Ubiquitin-specific processing pr otease 12) (Deubiquitinating enzyme 12). (Os10t0160000-01);Simil ar to Ubiquitin carboxyl-terminal hydrolase. (Os10t0160000-02) |
Parent gene strand | - |
Alternative splicing | Os10g0160000_circ_g.1 Os10g0160000_circ_g.2 Os10g0160000_circ_g.3 Os10g0160000_circ_g.5 Os10g0160000_circ_g.6 Os10g0160000_circ_g.7 Os10g0160000_circ_g.8 |
Support reads | 2/1 |
Tissues | root/shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os10t0160000-01:2 |
Conservation Information | |
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Conserved circRNAs | osi_circ_002744* |
PMCS | 0.391706468 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3834025-3833983(-) |
Potential amino acid sequence |
MYLSLPLPSTVTRMINVTVFSGTGDALPMPYTVKVQKNGVCGDLIKSLSVMCCLQSCETLLLAE VYDHRIYRYWNPSEPLCHVKDEDKLVAYRLPVGSENLLRVEILHRVVDRVSTSPLWFAQIVRKS QLHLTHSCTCHCHCPQQLLA*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |