Detail information of Os10g0160000_circ_g.5


General Information
CircRNA Name Os10g0160000_circ_g.5
ID in PlantcircBase osa_circ_006258
Alias NA
Organism Oryza sativa
Position chr10: 3835851-3840512  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0160000
Parent gene annotation Similar to Ubiquitin carboxyl-terminal hydrolase 12 (EC 3.1.2.15
) (Ubiquitin thiolesterase 12) (Ubiquitin-specific processing pr
otease 12) (Deubiquitinating enzyme 12). (Os10t0160000-01);Simil
ar to Ubiquitin carboxyl-terminal hydrolase. (Os10t0160000-02)
Parent gene strand -
Alternative splicing Os10g0160000_circ_g.1 Os10g0160000_circ_g.2 Os10g0160000_circ_g.3 Os10g0160000_circ_g.4 Os10g0160000_circ_g.6 Os10g0160000_circ_g.7 Os10g0160000_circ_g.8
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0160000-01:7
Os10t0160000-02:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCTATCTCTCCTGGTCTACTTGGAGCTTGAGGAAGCATGTCAGCATCATTCTCATCAGGTTTG
ATTAAGCCCACATAGCTTTGCCAGTTAAGCCACCAGctggaatttatcaacaattatagaatca
tttcgagctttatggtaattccagcattcctcagcaagttcttcatcaggacggccatcggcat
cctttgct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1231
Transcript exons: 3835851-3836021,3837329-3837469,3837549-3837941,3838514-
3838609,3838707-3838766,3839592-3839736,3840288-3840512
CTGGAATTTATCAACAATTATAGAATCATTTCGAGCTTTATGGTAATTCCAGCATTCCTCAGCA
AGTTCTTCATCAGGACGGCCATCGGCATCCTTTGCTTCAATATATGGTTTCTTTTTCACACGGT
TGAGATCTTCATGCAGACCATCCAATAGAAATGCAAGTAACTCCTGAGAATCATGTTGATTGTA
TCCACTGAACTGTGGAGCAAAACGAGAAAGTTTTGTCTTGAATGGACGTGGAGCTATAGAAGTT
CGACCAGCTGACCAAAGTTTTCTCAGTAATTCTCCAAATGCTGTTGCAAGTTCACCCTGTAGCC
CAAGTGGATTTTCTGTATTTATCTCCCGACTGTAATCCTGTAAAAAGTACTCCACCAATGGAGG
TGTATGCACCAAGGATTGTATAGCACTGTTCATGAAACATGTATTTCCCAAGTTATGTAAACCA
CTCAGTCCATGGATATCATCCTTTGTGCCATTGGAGAAACTATAACCATCTTCTGCGTCCCTTA
ATAAAGGACTAAAGCTATTATCTTGGGAAAAACTGGAACCAAATCCAGATGAAAAACCATTTGA
AAATGCAGGACCTCCAGCAATTGAAAACGATGATGTTGAGGGTTCCAACGGAATTAATGCTAGT
TCATTATTTGATCTTGTACCAAGATCCGAACACCAAGCATCATCTGCCTTTGCCTCTATGATAA
TCTCCTGGTCCATCATCAGTTGAGCTTCCTCAACCGTCTCATTAAGATTTATCAGTTTTTTTCC
CTTTGTCTTTTGGTAAAAATCCCAGATGTCGATCTTAGACTGTTCGACGGACAAAAGTGAGCAA
ACCAAGCTATAGAGCTCACTAACTTTGGCCTTTCTACTAATTCTGATAATTCTCTCCAAGCTGT
CTCTTCCATCAAATAATTTCAGACGGAGGGGATAGACATCCACAATGTAACTTCTGGAAGTTGG
ACTACTACAAATTACTCTTCTTGAGAGTTCTGGTCCACCTTTGTACCATTCATGTAGCTTCCTC
CATACTTCCTGGGGCACCAAAGCGTAGTCATCTCCTTCCCTCAGGGTTCTTTGAAGCTCTGGCT
CATCACCAATACTGCTGCTTTCCTCTGAAACTAGCTTTGAGTTATCTATCTCTCCTGGTCTACT
TGGAGCTTGAGGAAGCATGTCAGCATCATTCTCATCAGGTTTGATTAAGCCCACATAGCTTTGC
CAGTTAAGCCACCAG

Genomic sequence CTGGAATTTATCAACAATTATAGAATCATTTCGAGCTTTATGGTAATTCCAGCATTCCTCAGCA
AGTTCTTCATCAGGACGGCCATCGGCATCCTTTGCTTCAATATATGGTTTCTTTTTCACACGGT
TGAGATCTTCATGCAGACCATCCAATAGAAATGCAAGTAACTCCTGCATAAAAGAGGGGCAATA
AGTAACAGATCAATCTTCTTTAACAAAATGTGAACAATCTAAATTGCCAAATTTTGTCAAATAA
ATATAGCTTATCCAAACAAGAACTAAACGACAAGATGAGGGAGGCACTAATATATCAAAAAGCA
TAATAAACAATCCCTTATTCCGAAAGACACATTTATTAAAGGTTGCAACAGGTAATATTACACA
ATGAAAAAAAAATGTATGGAGAAATACATCAAGTTCTGAAAACAAGCAAAGCAGGGATGCATAA
GTAGTGATAAATAGGATGCATCAGTTCACAAAATGACAACAAACTGTATACAAGACGATGACGG
TTATAAAAGAGAAGATTACAGCAAGGAAGATAACAGGGACGCAATTAAAACAGATTCTAAAGAT
GGAAAACATATTCAGGAAAAGAGCTGAAAACTTGTGTCAATGTGTGGCCAAAAAGGATGCACCA
TTTATCAGAACAGCGAACAAGCCAAAAAGCAGAGACAATTTATCTCTTTGACAGGACATGTTGA
TTTATGCTACAAGTCGTTGACTTTTTTTCTAGTCAAACTTCTTTAAGTTTGACCAAGTTTATAT
AAAAATTTAGTAACATCTACAACACCAAATTAGTTTCATTAAAACTAACATTTAATATATTTTG
ATAATATGTTTGTTTTATGTTGAAAATGTGTCTACATTTTTCTATAAACTTGGTCTAACTTAAA
AAAGTTTGACTAGGAAAAAAGTCAAAACGACTTATAACAAAAGTTTGAGAAACATAGATATAAT
CATAGTTTGACACAATTTAAATAAACAACCAACACTATGGTTAAAAAACAAATTTCACAAAACC
TCAGGTTTGGAACGATTGTAACGCAAAATCCCAGCTTTTATAATTTGTTTCGAAGAACCCCAAA
TTTTTGGCCACACTCTTATACCACTATTTATGCATAACACTTGTACAATAAAATAGTATGCGGT
ATTGTTTTTAGTACATGTAAGAATTAGACCTGGGAGTTTTATTACCCAAAACCTAGGGTTTTGT
AATAAAATCTCACAAGAAATTAATGCATATGTACTTCGGAACTGAAATGTGCCTTAACACTAAC
AGTGCACCGGTGTGTTGAAATGAAAATTAACTTCATAGTTCTGGGACACAACAGCATGTTATCT
TAAAGTAAGAAATACGTTTATAATGTACGACTAATTAATGGAAGTTACAAAACAGAACAAAGGT
GCAAAACTCAGTGTCAGCACCATTTAACAGACATTTATAAGAAGTGTTTAGGAGAAACATTCGG
AGCAACCTGAGAATCATGTTGATTGTATCCACTGAACTGTGGAGCAAAACGAGAAAGTTTTGTC
TTGAATGGACGTGGAGCTATAGAAGTTCGACCAGCTGACCAAAGTTTTCTCAGTAATTCTCCAA
ATGCTGTTGCAAGTTCACCCTGCTCAATGGAGATGTTCTCAGAAATCACCAATAAGATCATAAG
TTCGCAATCTACATAATAGGACAACATGCATTACCTGTAGCCCAAGTGGATTTTCTGTATTTAT
CTCCCGACTGTAATCCTGTAAAAAGTACTCCACCAATGGAGGTGTATGCACCAAGGATTGTATA
GCACTGTTCATGAAACATGTATTTCCCAAGTTATGTAAACCACTCAGTCCATGGATATCATCCT
TTGTGCCATTGGAGAAACTATAACCATCTTCTGCGTCCCTTAATAAAGGACTAAAGCTATTATC
TTGGGAAAAACTGGAACCAAATCCAGATGAAAAACCATTTGAAAATGCAGGACCTCCAGCAATT
GAAAACGATGATGTTGAGGGTTCCAACGGAATTAATGCTAGTTCATTATTTGATCTTGTACCAA
GATCCGAACACCAAGCATCATCTGCCTTTGCCTCTATGATAATCTGCAAGCATAAAGAAAGAAG
TTGCATCTTCAGTTAATGTACAGACAGAAAATAGAAAATTGTTGGCTTGCCAACAAAATAGGGG
TAAATCGTTAAGAATAATAAGATTCAGGACACCCACAATACAGATAGTGAACATCTTAGAAGCA
ATAGTACATATTCATACCAGTACATATTCATACCCGAACATTGCAATGGTGCAAATGTAAACCA
TATTCATATGATAAAACACACTGATCAGAAGCATATTCATATGATAAAGACAAATGAGCCAACT
TTATTAACTCAAAAACAATTCTCATGTCAACCATAATAGAACTTGAAAAGTGCAAATGTAAATT
AAGATAATAAATTAAGCAATATTTAGGAGTTAGACAATTTATGACAAAGTCATTATCCATGTGC
AAGGTGACATCCTAAGGCAGACAGCAGACCATAGATGAAAAGGGCGCATAGCAACAATAACAAC
AAAAAGCCAGCGACCATCTCGCTGCCAGAATAAAGGAAACAATCATAGGTTTCAGCAGATAAAA
CAATAGATATGTGAATGGGAATTGCATAGTGCATAATACCTCCTGGTCCATCATCAGTTGAGCT
TCCTCAACCGTCTCATTAAGATTTATCAGTTTTTTTCCCTTTGTCTTTTGGTAAAAATCCCAGA
TGTCGATCTGAAGCATTAAAGTAGATGGAGCAAAGAATCATATACATAACCATAACTGACACTA
CAGATAGAGATATTAGATGAATAAATGATGATGCTTGTACCTTAGACTGTTCGACGGACAAAAG
TGAGCAAACCAAGCTATAGAGCTCACTAACTTTGGCCTGAAAGCACCAAATACAAACGTCAAAA
AATAAGTCAAGTCAATTGCACAAGAAACTAGAGTATCCAAGAAAGAAGATAATAGAAAGTTAAC
AAATTTACTGTTCAACAAAAGAGTATCTAAGAAAGAAGATAGTAGAAAGTTCATCTTTCTACTT
TTTTAGTAAAAGTGCTATTAGTTCAAGCAGTTAGTAAAACCAGCATTCAAAGTATTTGCCATTG
CGCATCAAATTTGTAACATTTTTTTCCTTCTGGTAATAGTCAACCAAAAATATCAGATCAAATT
CTGAAATTCAAGGGCTCAGCATACCAAAGTAGAAGATCGCAACAAGCAGGTGATGAACAGATGC
GATTTCTTTGACACTTCATCACAAAGAGGGAATCCTCATTGCTTTATTTCATATAATGCAAATG
TGTAAGCACTGGTTTTTATTTGACAAATGTGACTCTCCAACAATGTGATCAAGGTATAAAGAAT
GCCTAAACTGATCATCTAACCTATCAAATATAAGAAATGCTCCGATTTGTCCCACACAATAAGC
ACAGATCAAGGAGGCATGATGGCTAAGATAAGCTAATGTGAAATACAACCAAATGTTAACCACA
CAACCTCTTTGAAGCAATAAATTAGGGCTGGATAGTGGAATCATCATTGTAATAACTACACTAT
TGATTTCATCATCAATGGATAACTATGGAGGGACTACATCCCAAAAGAAATGCCAAACATTATG
AAACCAGGGAAGTTTCAAGGAGCATCAGTCGCATTATTGACGGTTAATTACATATGAAGCACAA
TGTCACAATATAAATCAAATATACCATACCTTTCTACTAATTCTGATAATTCTCTCCAAGCTGT
CTCTTCCATCAAATAATTTCAGACGGAGGGGATAGACATCCACAATGTAACTTCTGGAAGTTGG
ACTACTACAAATTACTCTTCTTGAGAGTTCTGGTCCACCTTTGTACCTGAAAAGTATTCATGTG
TCCATGAGTTGATGATCCCAATTGAAGAAGAATGTATTCAAGTACATTAGGCCATGGACATTAG
GGATAAGTTATGGTTACACTAGTATTCTGGCATAATCCATTGAAGAGCAACCTGACCTCATGAG
TGAAAACGCGTACAGTATGCATTTACCAGTTAGCACATCATTGTTTTAAACAAATATCAACAGG
AAACAGAAAAATTGAATAGGGCAACAACTAATTGCCAACAGACTGAGCAAACAGGACTACAAAC
CAGGCTTTTTTGGTTTGCACCTAAGTGGAGCACATGCAATCTACAATGTGGCATATCAAAGCCC
TGGCAGCCCAAGCTTGGCCAAATGAACAAGAGCGCCTAAAGAAAATAAGAACTAAAAAAATGTC
GCAAAATGGAACTGTAGTTATATGATCAAATTTTAATCAGGCAACCATTTTCTCTCATGACAAA
AAGTAAAGAGACAAACCCGTGGTTTTATGGGTACAACAAACTTTCTGACATGAAGGCAGTTAAA
CAGACATATAACATTGCATACCATTCATGTAGCTTCCTCCATACTTCCTGGGGCACCAAAGCGT
AGTCATCTCCTTCCCTCAGGGTTCTTTGAAGCTCTGGCTCATCACCAATACTGCTGCTTTCCTC
TGAAACTAGCTTTGAGTTATCTATCTCTCCTGGTCTACTTGGAGCTTGAGGAAGCATGTCAGCA
TCATTCTCATCAGGTTTGATTAAGCCCACATAGCTTTGCCAGTTAAGCCACCAG
Conservation Information
Conserved circRNAs osi_circ_002746* osi_circ_008803
PMCS 0.104805051
Functional Information
Coding potential Y
Potential coding position 3840453-3840503(-)
Potential amino acid sequence MLPQAPSRPGEIDNSKLVSEESSSIGDEPELQRTLREGDDYALVPQEVWRKLHEWYKGGPELSR
RVICSSPTSRSYIVDVYPLRLKLFDGRDSLERIIRISRKAKVSELYSLVCSLLSVEQSKIDIWD
FYQKTKGKKLINLNETVEEAQLMMDQEIIIEAKADDAWCSDLGTRSNNELALIPLEPSTSSFSI
AGGPAFSNGFSSGFGSSFSQDNSFSPLLRDAEDGYSFSNGTKDDIHGLSGLHNLGNTCFMNSAI
QSLVHTPPLVEYFLQDYSREINTENPLGLQGELATAFGELLRKLWSAGRTSIAPRPFKTKLSRF
APQFSGYNQHDSQELLAFLLDGLHEDLNRVKKKPYIEAKDADGRPDEELAEECWNYHKARNDSI
IVDKFQLVA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017