Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0160000_circ_g.1 |
ID in PlantcircBase | osa_circ_006254 |
Alias | NA |
Organism | Oryza sativa |
Position | chr10: 3832334-3836021 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os10g0160000 |
Parent gene annotation |
Similar to Ubiquitin carboxyl-terminal hydrolase 12 (EC 3.1.2.15 ) (Ubiquitin thiolesterase 12) (Ubiquitin-specific processing pr otease 12) (Deubiquitinating enzyme 12). (Os10t0160000-01);Simil ar to Ubiquitin carboxyl-terminal hydrolase. (Os10t0160000-02) |
Parent gene strand | - |
Alternative splicing | Os10g0160000_circ_g.2 Os10g0160000_circ_g.3 Os10g0160000_circ_g.4 Os10g0160000_circ_g.5 Os10g0160000_circ_g.6 Os10g0160000_circ_g.7 Os10g0160000_circ_g.8 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os10t0160000-01:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.126328514 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3836010-3832380(+) 3834025-3832336(-) |
Potential amino acid sequence |
MQVTPLHTQSSDHHPFRRND*(+) MYLSLPLPSTVTRMINVTVFSGTGDALPMPYTVKVQKNGVCGDLIKSLSVMCCLQSCETLLLAE VYDHRIYRYWNPSEPLCHVKDEDKLVAYRLPVGSENLLRVEILHRVVDRYTSESMFNLSRKLIG SPLVTCIPSDSTRKADIYATVSSLLAPFVRAKVHTLDESATKLNSNGPSLDGIVLTDNGVTCEE DVSTSNVDEEAADEEVLPFQLWLTDDKANKREHIDADSNGVPGSTMRLLMDWSDREHEVYDIKY MDELSVVFKPGFMSKKNRQEAVNLFSCLDAFLKDEPLGPDDMWYCPRCTEHKQASKKLDLWRLP EILVVHLKRFSYSRFMKNKLDTFVNFPIHDLDMSRYANHSRGDQPPIYELYAVINHYGGMGGGH YSAYAKELLAFLLDGLHEDLNRVKKKPYIEAKDADGRPDEELAEECWNYHKARNDSIIVDKFQG QYKSTLVCPDCKKISVTFDPFMYLSLPLPSTVTRMINVTVFSGTGDALPMPYTVKVQKNGVCGD LIKSLSVMCCLQSCETLLLAEVYDHRIYRYWNPSEPLCHVKDEDKLVAYRLPVGSENLLRVEIL HRVVDRYTSESMFNLSRKLIGSPLVTCIPSDSTRKADIYATVSSLLAPFVRAKVHTLDESATKL NSNGPSLDGIVLTDNGVTCEEDVSTSNVDEEAADEEVLPFQLWLTDDKANKREHIDADSNGVPG STMRLLMDWSDREHEVYDIKYMDELSVVFKPGFMSKKNRQEAVNLFSCLDAFLKDEPLGPDDMW YCPRCTEHKQASKKLDLWRLPEILVVHLKRFSYSRFMKNKLDTFVNFPIHDLDMSRYANHSRGD QPPIYELYAVINHYGGMGGGHYSAYAKELLAFLLDGLHEDLNRVKKKPYIEAKDADGRPDEELA EECWNYHKARNDSIIVDKFQGQYKSTLVCPDCKKISVTFDPFMYLSLPLPSTVTRMINVTVFSG TGDALPMPYTVKVQKNGVCGDLIKSLSVMCCLQSCETLLLAEVYDHRIYRYWNPSEPLCHVKDE DKLVAYRLPVGSENLLRVEILHRVVDRYTSESMFNLSRKLIGSPLVTCIPSDSTRKADIYATVS SLLAPFVRAKVHTLDESATKLNSNGPSLDGIVLTDNGVTCEEDVSTSNVDEEAADEEVLPFQLW LTDDKANKREHIDADSNGVPGSTMRLLMDWSDREHEVYDIKYMDELSVVFKPGFMSKKNRQEAV NLFSCLDAFLKDEPLGPDDMWYCPRCTEHKQASKKLDLWRLPEILVVHLKRFSYSRFMKNKLDT FVNFPIHDLDMSRYANHSRGDQPPIYELYAVINHYGGMGGGHYSAYAKELLAFLLDGLHEDLNR VKKKPYIEAKDADGRPDEELAEECWNYHKARNDSIIVDKFQGQYKSTLVCPDCKKISVTFDPFM YLSLPLPSTVTRMINVTVFSGTGDALPMPYTVKVQKNGVCGDLIKSLSVMCCLQSCETLLLAEV YDHRIYRYWNPSEPLCHVKDEDKLVAYRLPVGSENLLRVEILHRVVDRYTSESMFNLSRKLIGS PLVTCIPSDSTRKADIYATVSSLLAPFVRAKVHTLDESATKLNSNGPSLDGIVLTDNGVTCEED VSTSNVDEEAADEEVLPFQLWLTDDKANKREHIDADSNGVPGSTMRLLMDWSDREHEVYDIKYM DELSVVFKPGFMSKKNRQEAVNLFSCLDAFLKDEPLGPDDMWYCPRCTEHKQASKKLDLWRLPE ILVVHLKRFSYSRFMKNKLDTFVNFPIHDLDMSRYANHSRGDQPPIYELYAVINHYGGMGGGHY SAYAK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |