Detail information of Os10g0160000_circ_g.1


General Information
CircRNA Name Os10g0160000_circ_g.1
ID in PlantcircBase osa_circ_006254
Alias NA
Organism Oryza sativa
Position chr10: 3832334-3836021  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0160000
Parent gene annotation Similar to Ubiquitin carboxyl-terminal hydrolase 12 (EC 3.1.2.15
) (Ubiquitin thiolesterase 12) (Ubiquitin-specific processing pr
otease 12) (Deubiquitinating enzyme 12). (Os10t0160000-01);Simil
ar to Ubiquitin carboxyl-terminal hydrolase. (Os10t0160000-02)
Parent gene strand -
Alternative splicing Os10g0160000_circ_g.2 Os10g0160000_circ_g.3 Os10g0160000_circ_g.4 Os10g0160000_circ_g.5 Os10g0160000_circ_g.6 Os10g0160000_circ_g.7 Os10g0160000_circ_g.8
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0160000-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCAGGACGGCCATCGGCATCCTTTGCTTCAATATATGGTTTCTTTTTCACACGGTTGAGATC
TTCATGCAGACCATCCAATAGAAATGCAAGTAACTCctttgcatacgcagagtagtgaccacca
cccattccgccgtaatgattgatcactgcatagagttcataaatggggggctgatcacctcttg
agtgattt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTGCATACGCAGAGTAGTGACCACCACCCATTCCGCCGTAATGATTGATCACTGCATAGAGT
TCATAAATGGGGGGCTGATCACCTCTTGAGTGATTTGCATATCTACTCATATCAAGATCATGGA
TTGGAAAGTTGACAAAGGTATCAAGCTTGTTCTTCATAAACCGGCTGTATGAGAACCTTTTTAA
GTGAACTACCAATATCTCAGGCAACCTCCATAAGTCAAGCTTTTTGCTGGCTTGCTTGTGCTCC
GTGCATCTCGGACAGTACCTGCTCAGATAAGCAAGAAAAGTGATGCAAGCTCAGACATTGACCA
AGGTGCTTTCTTTATGGAAAAAACAGAGCAATTTGCAAGTATCAGTCAATAAGACAGAAATAAT
ACTAACCACATGTCATCAGGGCCCAGAGGTTCATCCTTCAGAAAAGCATCTAAGCATGAAAATA
AATTGACTGCTTCTTGCCGATTTTTCTTTGACATAAATCCAGGCTTGAAGACCACAGAAAGTTC
ATCCATGTACTTAATGTCATATACTTCATGTTCTCTATCAGACCAGTCCATTAATAACCTCATG
GTCGACCCAGGAACACCGTTAGAATCTGCATCAATATGCTCTCTCTTATTAGCTTTATCATCAG
TCAACCAAAGCTGAAATGGCAAAACCTCTTCATCAGCTGCTTCCTCATCCACATTTGATGTAGA
TACATCTTCCTCACAGGTGACACCATTGTCTGTCAGTACAATACCATCCAGGCTAGGTCCATTG
CTATTTAACTTGGTTGCAGATTCATCCAGAGTATGTACTTTTGCCCGCACAAATGGAGCCAGAA
GTGAAGAGACAGTTGCATAAATATCAGCTTTTCTTGTAGAGTCACTTGGAATACAAGTCACAAG
AGGGCTTCCAATTAGCTTCCGACTAAGATTAAACATGGACTCTGAAGTATATCTGCATAAATTA
ACAAAACAAATCAATGTGTAAGCACAAAAATGGAAACCAGTTCCAAGGAATAGAATAGTAGAAA
AAAGAAAATCACTACCATCAAATACATGGCATGTATCTGAGGTAAGAAATCTCAATGTCTGTAG
CATTTTTTTTGTCAGCTACACTAAACTATTCTCACGAATCATAAGCACAAAATTCTCACTAGAA
CCAAAATTCAAATAAGGGCAGGGTTCACCTATTCTAAGGAGCAACAATAGATGAACGGACATCA
TGGAAACACATATGTGGTCCTTGCTAACATAATTACAGACTCACCTATCAACCACCCGATGCAG
GATCTCTACCCTCAAGAGATTTTCAGAGCCAACCGGTAGCCTGTAAGCAACAAGTTTGTCTTCA
TCTTTTACATGACAAAGTGGTTCTGATGGGTTCCAATAGCGGTAAATCCGATGATCATATACCT
AAAGAATATGATGTTTATTAGCTATTTACTGAAAAAGAGTTATGCTTCAAATAACACCATTGCT
ACATAAGAACAAACTGGATTTTTTACCTCTGCAAGTAACAGTGTTTCGCAACTTTGTAAGCAAC
ACATAACACTCAGAGATTTTATAAGATCTCCACAAACTCCATTCTTTTGTACCTTCACAGTGTA
AGGCATGGGAAGGGCATCTCCAGTACCACTAAATACAGTTACATTAATCATGCGAGTAACTGTT
GAGGGCAATGGCAGTGACAAGTACATGAATGGGTCAAATGTAACTGAGATTTTCTTACAATCTG
GGCAAACCAAAGTGGACTTGTACTGACCCTGAAACATCAACCAAATGAATTGATGTTACTGCAG
AGATGTGACAATTAACAATTATCGTACACCACAAAATACGCCAAAGGGGAAAATGCTACTGAAA
TTTGAACATGTATATACTCCCTCCTTATAAAAATATAAGGTGTATTCACTGTTATTAACGTCAA
GACTTTGACCAACAATTTCTTTATTACTAACATACATATCATTTATGTGACTCAAAAGCATATC
ATAAGAAAGTTCCTTTGAATGTGAATCTATTAACATTGATTTTGCATCACAAAAATTATATTCT
AACATAATAATTGTTGGTTAAAGCCTAATCCAAAAATAACATATGCCTTCTATTTTTGTATGGA
GGAAATATTACAGAATGAAAGCAAAATAACTATACTATCTCTCCCACTTCCTAAAATAGCTTCA
AGAAACATCAATCATGTTTCACCATCAGAGAGCAATCATTAATCAACGCTATAACATTGTTCTT
TAGTATTTTCTTCTATTGAAAATACCCATCACTGCTTCATAAATCGACCAAGTAATAACCAACA
ATTGGTTCAAGCCAGATTCAACTCAAGACATAGCTTGATACAACGGTGCCAACCACATAAGTGG
GTTCACAGGTCGACCCACTTGTCCCAACATATATACTAACCGATCAGAAATATCCAACAAATTC
TACAGTGCTAACTAATAATACCAAGCACCAGAACTAGCTAGTATCTTGCACTCAGCAGCAAGTA
AAAGGCTGAGCAGTTTGTGAGGTAAATCTTGGTACGCTACATCTGCTTGCAGACAGACCTGGCC
TAATCTTTCAGGCCTAGTCTCAAGAAGATAATCATTGCAAAAGCAGCAAGCAATGGAAAAGGTA
TACTGATGAGTGGTGAATAGTTGTGAGCATACATAAACCTAATACCAAAATGAGCCATGCCACA
TTCAGGATTTTTGTATTTTCATTTCCAGTTTGATTTTAATTCTCTTTGTTCGGTAAATGGCTTT
AGATCATTATGCCATGTTAAGGTACAAAATATGCCAACCAGCAACCAATCATCATGCCAACGGC
TCAAGCACATCTCACGCCCCTACCAAACCACAACCCTACATTCCCGACTAGATTTTCTATTACA
TCTCTTTCCTCCCTCGGTTCCACAGTTTCACCAAATCAATTCAACGACAGAGCAGCGCAAGGCA
TGGCAGGCAGTCACAGAGCGGCAGTGGCACAGCAGGCCAGCAAAGGAGCAACGTCAAGCGGCAC
AGGTCAGCATTGGCATGTTCCGAGGAGAAACAGATACTGTTTTCTAACTGAACCAAACTGAATT
ATTCGGTTCAGGAGCTCTTTTTTGTGCAGCAATCATTCTGGTTACCACTATTTCAAAACCGGTT
GTCAAAAAATAGAAAACATCCAACAAAATTAACCAAAAACTGAATATCCCCACTACTTATGAGG
GCTCTACAGAAAATAGTACCCGTTCTCATCCCAAAAACGGTTAAATTTTTGTGATATAACCACT
GTTGAAATTTCACCTGATCCCTGCCTCAAAAAATAACCTGTTTCTTTAAAAAAGAAAATAAAAA
CCTGTTGTCTGATTACAAATAGTTTCAGCATTACCAAGTTCATTTCCATAATACGAAGATGCCT
AAAGAACAACCAGAGATAGGGAACCCTTATTCAAAAAAATGCAGAAATATCTTTAAAATAATTC
CAGATCCAAACAATATTTGCTCCACATGGTAAACATATACACGTAGCAAAGATTTCATTACCTG
GAATTTATCAACAATTATAGAATCATTTCGAGCTTTATGGTAATTCCAGCATTCCTCAGCAAGT
TCTTCATCAGGACGGCCATCGGCATCCTTTGCTTCAATATATGGTTTCTTTTTCACACGGTTGA
GATCTTCATGCAGACCATCCAATAGAAATGCAAGTAACTC
Conservation Information
Conserved circRNAs NA
PMCS 0.126328514
Functional Information
Coding potential Y
Potential coding position 3836010-3832380(+)
3834025-3832336(-)
Potential amino acid sequence MQVTPLHTQSSDHHPFRRND*(+)
MYLSLPLPSTVTRMINVTVFSGTGDALPMPYTVKVQKNGVCGDLIKSLSVMCCLQSCETLLLAE
VYDHRIYRYWNPSEPLCHVKDEDKLVAYRLPVGSENLLRVEILHRVVDRYTSESMFNLSRKLIG
SPLVTCIPSDSTRKADIYATVSSLLAPFVRAKVHTLDESATKLNSNGPSLDGIVLTDNGVTCEE
DVSTSNVDEEAADEEVLPFQLWLTDDKANKREHIDADSNGVPGSTMRLLMDWSDREHEVYDIKY
MDELSVVFKPGFMSKKNRQEAVNLFSCLDAFLKDEPLGPDDMWYCPRCTEHKQASKKLDLWRLP
EILVVHLKRFSYSRFMKNKLDTFVNFPIHDLDMSRYANHSRGDQPPIYELYAVINHYGGMGGGH
YSAYAKELLAFLLDGLHEDLNRVKKKPYIEAKDADGRPDEELAEECWNYHKARNDSIIVDKFQG
QYKSTLVCPDCKKISVTFDPFMYLSLPLPSTVTRMINVTVFSGTGDALPMPYTVKVQKNGVCGD
LIKSLSVMCCLQSCETLLLAEVYDHRIYRYWNPSEPLCHVKDEDKLVAYRLPVGSENLLRVEIL
HRVVDRYTSESMFNLSRKLIGSPLVTCIPSDSTRKADIYATVSSLLAPFVRAKVHTLDESATKL
NSNGPSLDGIVLTDNGVTCEEDVSTSNVDEEAADEEVLPFQLWLTDDKANKREHIDADSNGVPG
STMRLLMDWSDREHEVYDIKYMDELSVVFKPGFMSKKNRQEAVNLFSCLDAFLKDEPLGPDDMW
YCPRCTEHKQASKKLDLWRLPEILVVHLKRFSYSRFMKNKLDTFVNFPIHDLDMSRYANHSRGD
QPPIYELYAVINHYGGMGGGHYSAYAKELLAFLLDGLHEDLNRVKKKPYIEAKDADGRPDEELA
EECWNYHKARNDSIIVDKFQGQYKSTLVCPDCKKISVTFDPFMYLSLPLPSTVTRMINVTVFSG
TGDALPMPYTVKVQKNGVCGDLIKSLSVMCCLQSCETLLLAEVYDHRIYRYWNPSEPLCHVKDE
DKLVAYRLPVGSENLLRVEILHRVVDRYTSESMFNLSRKLIGSPLVTCIPSDSTRKADIYATVS
SLLAPFVRAKVHTLDESATKLNSNGPSLDGIVLTDNGVTCEEDVSTSNVDEEAADEEVLPFQLW
LTDDKANKREHIDADSNGVPGSTMRLLMDWSDREHEVYDIKYMDELSVVFKPGFMSKKNRQEAV
NLFSCLDAFLKDEPLGPDDMWYCPRCTEHKQASKKLDLWRLPEILVVHLKRFSYSRFMKNKLDT
FVNFPIHDLDMSRYANHSRGDQPPIYELYAVINHYGGMGGGHYSAYAKELLAFLLDGLHEDLNR
VKKKPYIEAKDADGRPDEELAEECWNYHKARNDSIIVDKFQGQYKSTLVCPDCKKISVTFDPFM
YLSLPLPSTVTRMINVTVFSGTGDALPMPYTVKVQKNGVCGDLIKSLSVMCCLQSCETLLLAEV
YDHRIYRYWNPSEPLCHVKDEDKLVAYRLPVGSENLLRVEILHRVVDRYTSESMFNLSRKLIGS
PLVTCIPSDSTRKADIYATVSSLLAPFVRAKVHTLDESATKLNSNGPSLDGIVLTDNGVTCEED
VSTSNVDEEAADEEVLPFQLWLTDDKANKREHIDADSNGVPGSTMRLLMDWSDREHEVYDIKYM
DELSVVFKPGFMSKKNRQEAVNLFSCLDAFLKDEPLGPDDMWYCPRCTEHKQASKKLDLWRLPE
ILVVHLKRFSYSRFMKNKLDTFVNFPIHDLDMSRYANHSRGDQPPIYELYAVINHYGGMGGGHY
SAYAK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017