Detail information of BGIOSGA032263_circ_g.1


General Information
CircRNA Name BGIOSGA032263_circ_g.1
ID in PlantcircBase osi_circ_002744
Alias 10:3492845|3493340
Organism Oryza sativa ssp. indica
Position chr10: 3492845-3493340  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA032263
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA032263_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA032263-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAACTGTTGAGGGCAATGGCAGTGACAAGTACATGAATGGGTCAAATGTAACTGAGATTTTCTT
ACAATCTGGGCAAACCAAAGTGGACTTGTACTGACCctatcaaccacccgatgcaggatctcta
ccctcaagagattttcagagccaaccggtagcctgtaagcaacaagtttgtcttcatcttttac
atgacaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTATCAACCACCCGATGCAGGATCTCTACCCTCAAGAGATTTTCAGAGCCAACCGGTAGCCTGT
AAGCAACAAGTTTGTCTTCATCTTTTACATGACAAAGTGGTTCTGATGGGTTCCAATAGCGGTA
AATCCGATGATCATATACCTAAAGAATATGATGTTTATTAGCTATTTACTGAAAAAGAGTTATG
CTTCAAATAACACCATTGCTACATAAGAACAAACTGGATTTTTTACCTCTGCAAGTAACAGTGT
TTCGCAACTTTGTAAGCAACACATAACACTCAGAGATTTTATAAGATCTCCACAAACTCCATTC
TTTTGTACCTTCACAGTGTAAGGCATGGGAAGGGCATCTCCAGTACCACTAAATACAGTTACAT
TAATCATGCGAGTAACTGTTGAGGGCAATGGCAGTGACAAGTACATGAATGGGTCAAATGTAAC
TGAGATTTTCTTACAATCTGGGCAAACCAAAGTGGACTTGTACTGACC
Conservation Information
Conserved circRNAs osa_circ_006257*
PMCS
Functional Information
Coding potential Y
Potential coding position 3493276-3493234(-)
Potential amino acid sequence MYLSLPLPSTVTRMINVTVFSGTGDALPMPYTVKVQKNGVCGDLIKSLSVMCCLQSCETLLLAE
VYDHRIYRYWNPSEPLCHVKDEDKLVAYRLPVGSENLLRVEILHRVVDRVSTSPLWFAQIVRKS
QLHLTHSCTCHCHCPQQLLA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021