Detail information of BGIOSGA001904_circ_g.3


General Information
CircRNA Name BGIOSGA001904_circ_g.3
ID in PlantcircBase osi_circ_001972
Alias 1:10571895|10573899
Organism Oryza sativa ssp. indica
Position chr1: 10571895-10573899  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA001904
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001904_circ_g.1 BGIOSGA001904_circ_g.2 BGIOSGA001904_circ_igg.1 BGIOSGA001904_circ_igg.2
Support reads NA
Tissues leaf
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA001904-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGGCCATGGTAAGTCCACCTGTACATCAGTAGTATTGGACCATTATTTTGTGGAGTAGGTCAT
GGTAATAGTGTAAATAAGCTGCCAATTTCTTAATTCctgtatattttggaaactgatactcgaa
tacttttcctgtggttgttgtaaaatacattgaagttgcatcattagattcatcttgttgcact
tctgtgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTATATTTTGGAAACTGATACTCGAATACTTTTCCTGTGGTTGTTGTAAAATACATTGAAGT
TGCATCATTAGATTCATCTTGTTGCACTTCTGTGATCGAACTAAGTCTTTGACTCTTAGGAGCT
CCATGTTTATACCATTTCCACTTCCTTCTATGCAAGCGCCGCTCCACTAATAAACCATCCTGCC
AATCTATAAAATATCTTTAGCAAATAGATAAATACCGTTTTACAATGGAAATAGAGGTCCTAGC
CATGGCATAATTTTACTTTATTGGTTAACAAGAATTCCTATTATTACATATATATTACTCTGAA
CTTATCTATAATGAGTTCATGAAGAGGCTGTCAATTTCTCTTCAATTGTATTATAACACATGAT
CGGTCATAATGTTCTTGTTGACACCCTATTTTGGTTGTTTTGCTTCTGCTACAAGATGTCCAAC
TAAGGAACCATATACATGTTTCTTTTTCTTTTAGTACATTTCTTGATATCATACTTTTTGCAAA
ACTATCATAAAAACCACAACTTTAAACAGGATTTTAAGGAACCATATGAACTTTGCAAAAAATG
TTTCAGAAAATGGGCTGCTCAGTCAAGATGGTTTCTGACGCATTGGACCACATAAAAGAGAGAT
AAGGCACATCCTTCCTGTTTACTTGACATGGGGGCAGATTCCGTTGAGGCTAAAATATCCACAT
CAGGTACCTTGAACAGACTGAATATGTCTTAAAAAGTATTCTTTTGTAGAAAAAGGTTTGTGCA
AAAGCATGATCTCAACTTCTCAAGAAGTATACTAATCTTTTTGCAAGTACCTTCATCAGCTCTG
TCAGTCTATCAGGAGCAGATAATATATTTTTGAGATTATTTTCATATTATAACAATCAGCATCG
CTAGACTGTATGCATTTATAATGTTGCTGCATTAGCTTGGATCCAGTAAGTCATTTCTGAAAAG
AAAATCCTTGCATACCTTTGTTATCAAGAAAAGTGATACTGAGTTAGATCCTAGCAGGCCATGT
AAAGCACACCCAACTGATGAGCTTAATGAGACATTCTCTGCTGTTTCTTCACTCCATATGTGCT
TTTTCCATGATGGTCTTGATTCTCTGTCGAACTCATACAAGTCTCCTGTAGAACTGCACCACAC
TTTCCCATCTTAGCACTGAAATACAGTAATTATACAAGGTATTCTACATCTTGGGATAAAAACA
TAAATGAGTATAGCCTTTTTCTTGTTTGAAAAACTGAGCGTAGCTTAGCTAGCGGGAGGTCTGA
ATGACCTTATTTGAAATCTAAGAGTGGCTTATTTGGTGGAGGTATACACCCTGCTACTTGAAAT
CCTTATGGCTCTAGATATTCTTATGCTGTATTTGTCTAATAGGTGGATCATCCATCTGCATAAC
ATATCAATGATTCTAGGAAGGTACTCCATTAGAGATACCTTCACTTCAAAGAAATATCAACAGT
TGATCAATTTTAAGTGAAGGTACATCTAATGCTTTCTAATGCCTTCCAAGTACTTGTAAAACAT
CTCAACCATGGTAGTTCTTAAAATAAAGGTGCCTCTAGTTTCTTTCAGGCACCAAAAATATCTC
AAATGTCTAAATTCTAATGTACACAGAGCAGGGGCAGAAGATAAGGAAAATAGTGCATAAACAT
TGTCATTTTTCTCACCTTCCTCTCTCCCCATTTGTACAAGTTGACTTTTGTTTCAGATATTCAA
GATTCACAAAAACAATAGAGAACCGACTATTGAACCAGTTTATTTTCCCACTAAAGTAGTTTGG
ATTGACACAACCCATTACCTCCTAAAGAACACATGACCATACCTTACTGTGAACACTGTCCCTG
GTCTTGCATTTCCAGCATCAGATATATATGATACATCTCCTCCTGGTGGGTGGCCATGGTAAGT
CCACCTGTACATCAGTAGTATTGGACCATTATTTTGTGGAGTAGGTCATGGTAATAGTGTAAAT
AAGCTGCCAATTTCTTAATTC
Conservation Information
Conserved circRNAs osa_circ_001297*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021