Detail information of BGIOSGA001904_circ_igg.2


General Information
CircRNA Name BGIOSGA001904_circ_igg.2
ID in PlantcircBase osi_circ_008912
Alias Chr01:9833568_9834485(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 10576444-10577361  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA001904_circ_g.1 BGIOSGA001904_circ_g.2 BGIOSGA001904_circ_g.3 BGIOSGA001904_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACTACAGCGCGGTGCAATCCAACTCCTGTTTCACTCAACTAGTCAAGCTTCTCTTCCTGCTGG
ATGATCGATCGGCTCGTCAGAAGCCATGCAGGCAAGggttcttgaaaaacatggaaaaggagct
cccgtttgctgatatcagacctgggaatttcttttacacctgctttgtcatcacttgctgaaaa
agaatatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTCTTGAAAAACATGGAAAAGGAGCTCCCGTTTGCTGATATCAGACCTGGGAATTTCTTTTA
CACCTGCTTTGTCATCACTTGCTGAAAAAGAATATCAAGATCTGATCGATTGATTGATCACCCT
GAGTCAGCTAAAGCCTGCGGTCAGGGAGGGGTAAGTGCAACGTGAGGCCTGCGTCACTCGCTCT
TGACTTGTACCGCGATCCATTATTGGTGGCATGGAAATTCTTAATCCAATCACAATAATCAGCA
GCCAGCCAAGTAAGTTCACCATCTTATTTACTAGTACTATGCATGCGTCTAGTGGTTTGTGTAG
TCAATCTAGTGATCCCTCCCCCAAAAAAGATATATAAAAAATATCCTCGATTGTTGATACTACA
TGATTACCCTGGCTTATTTCAGTTGGTATTTCACAGTCACAGCCACTGACCATATGATTGAGCT
TCCCACATGGCCCTAAGTCCCTAACTTGTGGTAGCACAGCTAACTATTACACTAAAGGCATCAC
CACCAAATTAGTCCAATTACACTGCTCGTAATGTCTTTACCTGTCTCCTGTGTGCTATGCCTAA
CAACTTAAGCACGAATTTTAGCTACAACGTTCTGTGCTAGTACTATTTCAGTTCAGTTTATCAG
AGATGAAGAAGTTTCTGTTCTTGTGGGAGGACCTAAGCAAAAACAGTACTTGCTGCAAAACCTT
AACTGACAATGGTTCCTTGCCTGACCATCCAAAACTATACTTTTCGGAAACACTGTGCAGGCAA
AACGAGGAAGGTGTTCTTGCCTACGCTGTGACCATAGCACAGCAGTACAGAACTACAGCGCGGT
GCAATCCAACTCCTGTTTCACTCAACTAGTCAAGCTTCTCTTCCTGCTGGATGATCGATCGGCT
CGTCAGAAGCCATGCAGGCAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021