Detail information of BGIOSGA001904_circ_igg.1


General Information
CircRNA Name BGIOSGA001904_circ_igg.1
ID in PlantcircBase osi_circ_001973
Alias 1:10572477|10577361
Organism Oryza sativa ssp. indica
Position chr1: 10572477-10577361  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA001904_circ_g.1 BGIOSGA001904_circ_g.2 BGIOSGA001904_circ_g.3 BGIOSGA001904_circ_igg.2
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACTACAGCGCGGTGCAATCCAACTCCTGTTTCACTCAACTAGTCAAGCTTCTCTTCCTGCTGG
ATGATCGATCGGCTCGTCAGAAGCCATGCAGGCAAGaaaatgggctgctcagtcaagatggttt
ctgacgcattggaccacataaaagagagataaggcacatccttcctgtttacttgacatggggg
cagattcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAAATGGGCTGCTCAGTCAAGATGGTTTCTGACGCATTGGACCACATAAAAGAGAGATAAGGCA
CATCCTTCCTGTTTACTTGACATGGGGGCAGATTCCGTTGAGGCTAAAATATCCACATCAGGTA
CCTTGAACAGACTGAATATGTCTTAAAAAGTATTCTTTTGTAGAAAAAGGTTTGTGCAAAAGCA
TGATCTCAACTTCTCAAGAAGTATACTAATCTTTTTGCAAGTACCTTCATCAGCTCTGTCAGTC
TATCAGGAGCAGATAATATATTTTTGAGATTATTTTCATATTATAACAATCAGCATCGCTAGAC
TGTATGCATTTATAATGTTGCTGCATTAGCTTGGATCCAGTAAGTCATTTCTGAAAAGAAAATC
CTTGCATACCTTTGTTATCAAGAAAAGTGATACTGAGTTAGATCCTAGCAGGCCATGTAAAGCA
CACCCAACTGATGAGCTTAATGAGACATTCTCTGCTGTTTCTTCACTCCATATGTGCTTTTTCC
ATGATGGTCTTGATTCTCTGTCGAACTCATACAAGTCTCCTGTAGAACTGCACCACACTTTCCC
ATCTTAGCACTGAAATACAGTAATTATACAAGGTATTCTACATCTTGGGATAAAAACATAAATG
AGTATAGCCTTTTTCTTGTTTGAAAAACTGAGCGTAGCTTAGCTAGCGGGAGGTCTGAATGACC
TTATTTGAAATCTAAGAGTGGCTTATTTGGTGGAGGTATACACCCTGCTACTTGAAATCCTTAT
GGCTCTAGATATTCTTATGCTGTATTTGTCTAATAGGTGGATCATCCATCTGCATAACATATCA
ATGATTCTAGGAAGGTACTCCATTAGAGATACCTTCACTTCAAAGAAATATCAACAGTTGATCA
ATTTTAAGTGAAGGTACATCTAATGCTTTCTAATGCCTTCCAAGTACTTGTAAAACATCTCAAC
CATGGTAGTTCTTAAAATAAAGGTGCCTCTAGTTTCTTTCAGGCACCAAAAATATCTCAAATGT
CTAAATTCTAATGTACACAGAGCAGGGGCAGAAGATAAGGAAAATAGTGCATAAACATTGTCAT
TTTTCTCACCTTCCTCTCTCCCCATTTGTACAAGTTGACTTTTGTTTCAGATATTCAAGATTCA
CAAAAACAATAGAGAACCGACTATTGAACCAGTTTATTTTCCCACTAAAGTAGTTTGGATTGAC
ACAACCCATTACCTCCTAAAGAACACATGACCATACCTTACTGTGAACACTGTCCCTGGTCTTG
CATTTCCAGCATCAGATATATATGATACATCTCCTCCTGGTGGGTGGCCATGGTAAGTCCACCT
GTACATCAGTAGTATTGGACCATTATTTTGTGGAGTAGGTCATGGTAATAGTGTAAATAAGCTG
CCAATTTCTTAATTCCTGAAAAAAATGGCGGCATTCACTCAAGTTAATCAAGTGGTAGCCTGGT
AGGCATGGAACCATTCAGAATTTTATATGTACCGTCAGCATTTTAATCAGTAGAAATATAATGG
TCAACCCTTTATTGTGGCATGGCATCATTATTTTTTTGAGAAGTATGTGGATTGCCATCTAATA
TAGTGATGTTTATGATGATGTGGCACATTCATGTACTTTTTTGTACTTAGCTCTAAATATTATT
AAAGATGCGTTGTTTTCAACCTCATATGTTTTCTTTATATATCAGATGCACTCACACAACAATA
ATAGTAATGAAAATATCATAAAACATGACTTTACGGTACTGATTTATCATGTCAAATTTGAATA
GGACATCATATGTATTCCGGTAGGGCTCTCCCCTACTGTTTTCTTTTCAGTAAAAGAACATTGT
ATTCATATGCTAGTTATTTCATTGAATATTGACCAAGATATGGCAGCCGTGCAAATTAATATAA
ACTTCAGTAATACTGCTTCATACCTTAGGGGCTGAAGTTCTGTGACCTCCACTAGGGATCCATT
TGTAATAGATAGGAAAAGTTTCCTGTTTGGGAGGAACAATAATTTCCTAAATTATCTTCTTATA
TGCACAAACTGCACTAGAAAGGAAGCATCAGGTGTAGAAAGCAGTCTCACCTTCCATCATAGGA
CACTATCCCATTTCTTATGTGCATAGCTTGACTTTGTGTTTTTTCTCCAAGGACTATGAATTGT
TGTTCAAAGTTGAATATTACCTCTGTCCAGATAGGTTGTGCATGTTCATTTAGCTGTAGCTGAA
AGTGTGTAGAAATATTAGATCTAGCATAATAGAAACTTTCTTTTTTTGGCAATTGAATTCATCA
GAAGCTTATTGTCTCATGAGAGGAAACTACTTCCCTAGTTATTTACATACAGTTCTTATTCCTC
TGCTCTTCCCATAAGACCTCCTATCGGCTCTTCATTAATCATGACTACATGTCTATTGATCTTT
GCTTAACAATTTCAAATTTTGGGCACATGTAATATAAGGTACTGCAACAAAACAACAGAATTGG
GTTGGGGAAAAGAAGGGAGGGGAAGGGATAAAACTACTGTTCTGTTACAGAACTTCAACAGTTG
AAGAAAAACATACAACGGTAAAGATGACCAAGGAAGGGTATTGTAACAGTTATGATATGAGCAT
AGTTCTGTCATACAGATAGAGATGCAAGTTACCTGATAGAGGATTCCAGCCTCTGAGAGAGCAA
GAATAGTTGTATTCACAATGAAAGTTGCTGTAGCATAGCCAACTGAAATTGGTAGTTCATGAGG
AGCAATCACCCATGCCAGCCCATTCCAGAACCTCTCATAAATTGATCCACTTTGCCCTGTCACC
CACACAGATGATTCTGACATGCGCGTCAAGGAAATCCTTTTTCTTATGGGCAGGACTGGATCAT
TTCTATCTGCTTGATCATTGTCATCGATCTCTGCATCCTTCTCCTCCTGACTAGAAATTGAAGC
ACGGCCATGTCTCCTTTCCGGTTGCTCGATTGATCCTACCTTCGTGCAGGTATCGTTGATGCAG
GACATCAAATTGAAAGGCATGCTTATTTCCACCCAGGTATTACTCTGTTCCTGGTACTCCCAGA
ACTTGTTTGTCTTCTGCTTAAACTTTGCTTCCTGCCTCAAGCTAGGATGTAAGGGGCACCATGA
ATGAACAGAAGCAGCAGACTCCAGGAGAACACATGCTACAAAACATAGGAACCACAACAGGAAT
CTGCAACTGCAAGATGGATCATCCATGGCCATCTTATAGGACTTATCCTCGATGTTGATGCGTG
CCGGCGTCCAAGGTGTCCTCCATAGCAGCACAGTTCTTGCAGAGATAGCCCTTGAACCTGGAAG
GTTGGAAGCTAGATATCATGAGCTCTTTTTTTTCTGCAGGAGAATGAAGTATGGGAAGGACCCC
CTCTTGTACTTGCTGTCCTGCAGCTCAAAACAAATAGGTATGCAGTGCAAATAAATGTTGCAGA
GAAGAGGAAGAGAGAGGAGGTATGGAGGAGGGTACCAATATCTCGCTGTGAGACTCAACTGTCA
TTTGATGAAGGCCATAAAGTCATTAGCACAGAAGCTGGGTGGTTTGCTCTCCTTTTCAATTGCT
TCTTTTCCCTACAACTTTCTCACCAGTCGCTGTTAATTCCACCAATCAAAATTTTTTAAGGAGA
TAGTTGTTGCAACCTTCGCATCTCCCACACACATATCGGTACTGTTAGATAATGGTCCTAATCT
CTTATACTAGTGAATAACTTTATGCCTATACGGTAGGGAGGGGGAAGGCATGAGAATCTTGGAT
ATATTTCCATTGGACAAGTTTTTTTGTGGAAAATGAAGTTAAAATTCATTGGGACCGAATAAAG
TTGTAGCTTTTATATGACCAGTTCTTAAATCGTCCTTTTCTCCTTCTATTCCTGAAGTTGATGG
TTGCTTGAGAGTTCAAATGTCCATGTGCAAGTTGCCAAACGCTAACCACTGCCGATGACTGCAG
GTTCTTGAAAAACATGGAAAAGGAGCTCCCGTTTGCTGATATCAGACCTGGGAATTTCTTTTAC
ACCTGCTTTGTCATCACTTGCTGAAAAAGAATATCAAGATCTGATCGATTGATTGATCACCCTG
AGTCAGCTAAAGCCTGCGGTCAGGGAGGGGTAAGTGCAACGTGAGGCCTGCGTCACTCGCTCTT
GACTTGTACCGCGATCCATTATTGGTGGCATGGAAATTCTTAATCCAATCACAATAATCAGCAG
CCAGCCAAGTAAGTTCACCATCTTATTTACTAGTACTATGCATGCGTCTAGTGGTTTGTGTAGT
CAATCTAGTGATCCCTCCCCCAAAAAAGATATATAAAAAATATCCTCGATTGTTGATACTACAT
GATTACCCTGGCTTATTTCAGTTGGTATTTCACAGTCACAGCCACTGACCATATGATTGAGCTT
CCCACATGGCCCTAAGTCCCTAACTTGTGGTAGCACAGCTAACTATTACACTAAAGGCATCACC
ACCAAATTAGTCCAATTACACTGCTCGTAATGTCTTTACCTGTCTCCTGTGTGCTATGCCTAAC
AACTTAAGCACGAATTTTAGCTACAACGTTCTGTGCTAGTACTATTTCAGTTCAGTTTATCAGA
GATGAAGAAGTTTCTGTTCTTGTGGGAGGACCTAAGCAAAAACAGTACTTGCTGCAAAACCTTA
ACTGACAATGGTTCCTTGCCTGACCATCCAAAACTATACTTTTCGGAAACACTGTGCAGGCAAA
ACGAGGAAGGTGTTCTTGCCTACGCTGTGACCATAGCACAGCAGTACAGAACTACAGCGCGGTG
CAATCCAACTCCTGTTTCACTCAACTAGTCAAGCTTCTCTTCCTGCTGGATGATCGATCGGCTC
GTCAGAAGCCATGCAGGCAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021