Detail information of BGIOSGA001904_circ_g.1


General Information
CircRNA Name BGIOSGA001904_circ_g.1
ID in PlantcircBase osi_circ_008911
Alias Chr01:9829018_9830942(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 10571894-10573818  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA001904
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001904_circ_g.2 BGIOSGA001904_circ_g.3 BGIOSGA001904_circ_igg.1 BGIOSGA001904_circ_igg.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA001904-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGACCATACCTTACTGTGAACACTGTCCCTGGTCTTGCATTTCCAGCATCAGATATATATGAT
ACATCTCCTCCTGGTGGGTGGCCATGGTAAGTCCACcctgtatattttggaaactgatactcga
atacttttcctgtggttgttgtaaaatacattgaagttgcatcattagattcatcttgttgcac
ttctgtga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTATATTTTGGAAACTGATACTCGAATACTTTTCCTGTGGTTGTTGTAAAATACATTGAAG
TTGCATCATTAGATTCATCTTGTTGCACTTCTGTGATCGAACTAAGTCTTTGACTCTTAGGAGC
TCCATGTTTATACCATTTCCACTTCCTTCTATGCAAGCGCCGCTCCACTAATAAACCATCCTGC
CAATCTATAAAATATCTTTAGCAAATAGATAAATACCGTTTTACAATGGAAATAGAGGTCCTAG
CCATGGCATAATTTTACTTTATTGGTTAACAAGAATTCCTATTATTACATATATATTACTCTGA
ACTTATCTATAATGAGTTCATGAAGAGGCTGTCAATTTCTCTTCAATTGTATTATAACACATGA
TCGGTCATAATGTTCTTGTTGACACCCTATTTTGGTTGTTTTGCTTCTGCTACAAGATGTCCAA
CTAAGGAACCATATACATGTTTCTTTTTCTTTTAGTACATTTCTTGATATCATACTTTTTGCAA
AACTATCATAAAAACCACAACTTTAAACAGGATTTTAAGGAACCATATGAACTTTGCAAAAAAT
GTTTCAGAAAATGGGCTGCTCAGTCAAGATGGTTTCTGACGCATTGGACCACATAAAAGAGAGA
TAAGGCACATCCTTCCTGTTTACTTGACATGGGGGCAGATTCCGTTGAGGCTAAAATATCCACA
TCAGGTACCTTGAACAGACTGAATATGTCTTAAAAAGTATTCTTTTGTAGAAAAAGGTTTGTGC
AAAAGCATGATCTCAACTTCTCAAGAAGTATACTAATCTTTTTGCAAGTACCTTCATCAGCTCT
GTCAGTCTATCAGGAGCAGATAATATATTTTTGAGATTATTTTCATATTATAACAATCAGCATC
GCTAGACTGTATGCATTTATAATGTTGCTGCATTAGCTTGGATCCAGTAAGTCATTTCTGAAAA
GAAAATCCTTGCATACCTTTGTTATCAAGAAAAGTGATACTGAGTTAGATCCTAGCAGGCCATG
TAAAGCACACCCAACTGATGAGCTTAATGAGACATTCTCTGCTGTTTCTTCACTCCATATGTGC
TTTTTCCATGATGGTCTTGATTCTCTGTCGAACTCATACAAGTCTCCTGTAGAACTGCACCACA
CTTTCCCATCTTAGCACTGAAATACAGTAATTATACAAGGTATTCTACATCTTGGGATAAAAAC
ATAAATGAGTATAGCCTTTTTCTTGTTTGAAAAACTGAGCGTAGCTTAGCTAGCGGGAGGTCTG
AATGACCTTATTTGAAATCTAAGAGTGGCTTATTTGGTGGAGGTATACACCCTGCTACTTGAAA
TCCTTATGGCTCTAGATATTCTTATGCTGTATTTGTCTAATAGGTGGATCATCCATCTGCATAA
CATATCAATGATTCTAGGAAGGTACTCCATTAGAGATACCTTCACTTCAAAGAAATATCAACAG
TTGATCAATTTTAAGTGAAGGTACATCTAATGCTTTCTAATGCCTTCCAAGTACTTGTAAAACA
TCTCAACCATGGTAGTTCTTAAAATAAAGGTGCCTCTAGTTTCTTTCAGGCACCAAAAATATCT
CAAATGTCTAAATTCTAATGTACACAGAGCAGGGGCAGAAGATAAGGAAAATAGTGCATAAACA
TTGTCATTTTTCTCACCTTCCTCTCTCCCCATTTGTACAAGTTGACTTTTGTTTCAGATATTCA
AGATTCACAAAAACAATAGAGAACCGACTATTGAACCAGTTTATTTTCCCACTAAAGTAGTTTG
GATTGACACAACCCATTACCTCCTAAAGAACACATGACCATACCTTACTGTGAACACTGTCCCT
GGTCTTGCATTTCCAGCATCAGATATATATGATACATCTCCTCCTGGTGGGTGGCCATGGTAAG
TCCAC
Conservation Information
Conserved circRNAs osa_circ_001296
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021