Detail information of Os11g0286800_circ_g.8


General Information
CircRNA Name Os11g0286800_circ_g.8
ID in PlantcircBase osa_circ_009086
Alias Os_ciR4583
Organism Oryza sativa
Position chr11: 10357498-10361054  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder, find_circ
Parent gene Os11g0286800
Parent gene annotation Squalene cyclase domain containing protein. (Os11t0286800-01);Si
milar to Cycloartenol synthase. (Os11t0286800-02);Similar to Cyc
loartenol synthase. (Os11t0286800-03);Similar to Cycloartenol sy
nthase. (Os11t0286800-04)
Parent gene strand -
Alternative splicing Os11g0286500_circ_ag.1 Os11g0286500_circ_ag.2 Os11g0286800_circ_g.1 Os11g0286800_circ_g.2 Os11g0286800_circ_g.3 Os11g0286800_circ_g.4 Os11g0286800_circ_g.5 Os11g0286800_circ_g.6 Os11g0286800_circ_g.7 Os11g0286800_circ_g.9 Os11g0286800_circ_g.10 Os11g0286800_circ_g.11 Os11g0286800_circ_g.12 Os11g0286800_circ_g.13 Os11g0286800_circ_g.14 Os11g0286800_circ_g.15
Support reads 4/2
Tissues root/shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0286800-03:5
Os11t0286800-02:1
Os11t0286800-04:5
Os11t0286800-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCTTCTGCAAGCCATAGGAAATCATGAATCCTTGGAACGTGTCGTCTGAATGCATTGGAGTT
CGGATTTTCTATCCAGCAGCAAATCATATTTAATACctccacccatggagttgttctcttagat
tctgcagaggacaaagtgccatccttgttctttgaaagaatgtacaaaatagctgtgtcagcta
acttttca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCACCCATGGAGTTGTTCTCTTAGATTCTGCAGAGGACAAAGTGCCATCCTTGTTCTTTGAA
AGAATGTACAAAATAGCTGTGTCAGCTAACTTTTCAAGTTTAAAATAAGTATCATACAACTTAT
TTAATCATGTATTTGAAGGTGGATTGAGTTTCACAATTGGAATAATCAAATTGTGCACTTCACT
ATTGTAATCTTGTTGTGCTTAATAAGTGAATTTAAATATTACAAAATACTACAAATAATAGTAA
TGATATGCTGGAATTCTTATTCTCATACCACATATGAAAGTAGGCAGTCAATAGCATCATACAA
CCTTTGTTCTTGAATTGGATCTCCTACTTGGGTTGGTGGAATCTTTGATAACAACAACACCGCC
TAAAGATATAAATAAATCCCAAAAATACAGATCAGTATTGTATATCTTTGTTCAGAAATTTACA
TTGTCATGTAACATCCTAAAAATTTCAGAATTTTTTTAATGAAAACATTTTAAAGCTATTGTTG
TTCATTATTACGAGTTTGGTGTCTTTTCCACTCCTCCCTTCATATTTCTCTGACCCATTCATAT
TCTTGACCATTCGCTCGAATTATGTCAAGCCCACTGAGACACTCCCAAAATATCGAATGATCAC
TATTCATATTGGGCCAATCTAATTCTGCCCTATGGCAGGTTTTCACCAAAATTCCCTCTCTTTC
TCCTCTGGTCATCCTTTACTTCCTCTGCTGTGGCATTGCCAACAGATGCTCACCTAAGCTGCAT
CATCATGCTGGTGCTAGCCCTCATCCATTGATTAATGAACACCATAACAGAATAGCTGTGCCGC
GTCACTACAAGGCATGACGGGATGACTTTGACTTGGACAGGAATGAGACTAGATTAATTCTCTT
CCATTGATTAATGAATAGAGATACAACCTCATCCTTATAAATATGGCCGTCTTCACCCTTAAGA
GAAACACAGGAACTGATCTCTAACATTCAGAAATAACTCAAAAACCAACCTAATCTAAACCCGC
ACTAATCATACAGTAACGAGCATGTTGTGGTCATTTGCTCCTCATCCAATACCCCTGATACTAT
ACCCACCCCACAGAACACATGTAGTAGGCCATTTGTGTTATTCACCAATGGTCCCTCAAGCTAG
TTCATGAACTACATTGTGCCATTTGTACCACCTTCTGCACGCACGTCACACACTACCTTTGGAC
ACGCCAGGCACACATGGTTTAGCATGCCACCTCAACAGGTGTCCATGGTAGTGTGCACTTGTGG
AACGCAGTTGGCTGCTGGCATATGGGGGAGAGGCCAATGCATGTGGCCGTGAACGAGCGAATAG
CATGGCAAGTTAATCAAGGTGGTAACTATTAGCTACTATTCCAAACTAGCCTGTAGCCATGGTA
GTCAAGGTGGCAAGGTTTGGACTGTCATGTCTGTAAGTGAACATAGTTTCAAAAAAAATTCTTT
AGAAGATAATGAAAAACAATATAACTGGCATGAGCCAAAGGGCCTATTCAGCAGCCATGGCTGT
GACTTTGGCTGCTCCCGCATGCTGTTTTCTACTGTATGCGGTACTAGTCCAATTTGCTAGAGCG
CAGCCGCAGCCTCGGGCAGCCGAACAGGCCCAAAGAAAGTAAGAAACTTGAAAACCTTAAGGCA
TTCGGCAAGAGTATCCGCAATAGGCCATCCATTTTCTCCATTTGATAATGTCCATGAACCTTTT
GACCTTTCACGGTAATATCTTTTGTAATTAGGACAATTCTTGGTTACCTTTAACAAAAATAATG
ATAATGTCAAACTTTAGCAATTACAATCACATGTATATGTCTAAAGTATCACATTCAACAAACC
TGCGCATTCTTTATAAAATCATGAGCTTTCTTGATAGTTTCACTAAATTCTTGGGTAAGGCCGG
TTGAGCAGTAGGCCTGAACTATAAGGGCAGTATCCCAGCACCGGCTACCAACGTACACCTAGTT
ATTCGAATAGAACAACATAAATAATTCACATATATAGAATACAAAGACAACCACATATCAGAAG
GAACAACATATATTTCTATTAAAACATTATTTCATGAGAATACTTTTTATGAAGCCACACATTA
CTGAATAAAATTTTGGTGACTCAGTTTTTCTGATGTCCATAAAAAAAAGTATCATAAAATAAAC
TCATATAGCCTCACATCATAAAATTTATTTTCTTCCATTTTTACTTTTTTGGCCTATTACAGCC
GGTGGCGGTGCCACCTCCCGGGCAGGTCAGGCGACCGCTTGGGCTCCGCCACTGCCGTACGTCT
CCACTACCGATAGCTGTCAACACCTATAAAAATTAGTTGATCATCGAAAAACACTATTAGTCGC
CCGGTCTTAATGTCGCCGCTGGCTCCACCACTGATAACAACGATGCGGGCGGTCGTTTAAACAG
AACCGTCATAAAAAAAAGAGTTGTCCCATGCGACTGTATTGTGAAACTACCAGTGAAAAACACA
CTTTTGCTTCGGCTTTTTAAGATATTTCTATATGTAAACACATTAATTAACACGGGCGGTTTTT
ATCAGCCTGTACAATTACTTAGTTTTGCCGACTCTAGACTAATGGCGGTTCTGAAAACACTCAT
ATAAACAAGTGACCAACCATCTGGAAACATGTTTTATGTACCAGTTTGTATTAATAAAGCTATT
ATTTAGGAGCTGTTAATATAGGAGTATAACTGGACTGATGCACATGTGCGTCGCGAACCATCTG
GCGATCGATATCTTACGGCTAAGATCCAAGCGTGGTGATTTTACAAATAACAAGCGTGCGGATT
AAAACGTTTGTGTAATTTGTGTTGATTTGATCCGGCGAGGTGTGGCTTTTGATTTGTTCATTTT
TTGTGGTTTACTTATGATGCATGCAAATAGTTTGTGTAATTTGTGTTGTGGATTGGATGGTGAA
ACACCTATGAATAATGATTTGTCCTTGCTATGGATGGATGATGATTTGTTCTTTCTGTGGATGG
ATGATGATTTATTCTTGCTGCGAATGGATATTTGTAATGGATGGATGATGATATGGATGTGGGA
GGATGGACCGACTCGATGCATCGGCTTGATTTGAGGCGATGCATCGAACCGTTTTTTTTTTTGG
ATTCGTGGCACCTATTTCTCTTCACATTAATGCTGGCCTTTATGGTGCCGGTTGGGAAAACCGG
CACCTATTTCTCTTCACATTAATGCTGGCCTTTATGGTGCCGGTTGGGAAAACCGGCACCTAAG
GGGGGTTTCCTAACCGGCACCAATTAGGGTTTCTGTTGTACTGAATAAAAATACCACATGATAC
CACATGTAACGGTTTGTTGTAAGCCGGCACATATGAGCAGAACATGCTTATAACAATACGTTCC
CTAAGTTGTATATGGTCAATTTTCAGAGTATAAAACAAGTATAAGTTTAACCTTTGACTTCATT
CCATCTTCTGCAAGCCATAGGAAATCATGAATCCTTGGAACGTGTCGTCTGAATGCATTGGAGT
TCGGATTTTCTATCCAGCAGCAAATCATATTTAATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.207963279
Functional Information
Coding potential Y
Potential coding position 10361007-10357520(+)
10361047-10357500(-)
10357509-10360980(-)
Potential amino acid sequence MHWSSDFLSSSKSYLIPPPMELFS*(+)
MICCWIENPNSNAFRRHVPRIHDFLWLAEDGMKSKVYVGSRCWDTALIVQAYCSTGLTQEFSET
IKKAHDFIKNAQVTKNCPNYKRYYRERSKGSWTLSNGENGWPIADTLAECLKAVLLLSKIPPTQ
VGDPIQEQRLYDAIDCLLSYVNKDGTLSSAESKRTTPWVEVLNMICCWIENPNSNAFRRHVPRI
HDFLWLAEDGMKSKVYVGSRCWDTALIVQAYCSTGLTQEFSETIKKAHDFIKNAQVTKNCPNYK
RYYRERSKGSWTLSNGENGWPIADTLAECLKAVLLLSKIPPTQVGDPIQEQRLYDAIDCLLSYV
NKDGTLSSAESKRTTPWVEVLNMICCWIENPNSNAFRRHVPRIHDFLWLAEDGMKSKVYVGSRC
WDTALIVQAYCSTGLTQEFSETIKKAHDFIKNAQVTKNCPNYKRYYRERSKGSWTLSNGENGWP
IADTLAECLKAVLLLSKIPPTQVGDPIQEQRLYDAIDCLLSYVNKDGTLSSAESKRTTPWVEVL
NMICCWIENPNSNAFRRHVPRIHDFLWLAEDGMKSKVYVGSRCWDTALIVQAYCSTGLTQEFSE
TIKKAHDFIKNAQVTKNCPNYKRYYRERSKGSWTLSNGENGWPIADTLAECLKAVLLLSKIPPT
QVGDPIQEQRLYDAIDCLLSYVNKDGTLSSAESKRTTPWVE(-)
MGGGIKYDLLLDRKSELQCIQTTRSKDS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017