Plant Circular RNA Database

Detail information of Os11g0286800_circ_g.12

			
						 General Information
					
						CircRNA Name
						Os11g0286800_circ_g.12
					
						ID in PlantcircBase
						osa_circ_009090
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr11: 10362181-10367476  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os11g0286800						
					
						Parent gene annotation
						
							Squalene cyclase domain containing protein. (Os11t0286800-01);Si
milar to Cycloartenol synthase. (Os11t0286800-02);Similar to Cyc
loartenol synthase. (Os11t0286800-03);Similar to Cycloartenol sy
nthase. (Os11t0286800-04)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os11g0286500_circ_ag.1 Os11g0286500_circ_ag.2 Os11g0286800_circ_g.1 Os11g0286800_circ_g.2 Os11g0286800_circ_g.3 Os11g0286800_circ_g.4 Os11g0286800_circ_g.5 Os11g0286800_circ_g.6 Os11g0286800_circ_g.7 Os11g0286800_circ_g.8 Os11g0286800_circ_g.9 Os11g0286800_circ_g.10 Os11g0286800_circ_g.11 Os11g0286800_circ_g.13 Os11g0286800_circ_g.14 Os11g0286800_circ_g.15 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os11t0286800-03:5
Os11t0286800-01:6
Os11t0286800-02:6
Os11t0286800-04:2

General Information
CircRNA Name	Os11g0286800_circ_g.12
ID in PlantcircBase	osa_circ_009090
Alias	NA
Organism	Oryza sativa
Position	chr11: 10362181-10367476 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os11g0286800
Parent gene annotation	Squalene cyclase domain containing protein. (Os11t0286800-01);Si milar to Cycloartenol synthase. (Os11t0286800-02);Similar to Cyc loartenol synthase. (Os11t0286800-03);Similar to Cycloartenol sy nthase. (Os11t0286800-04)
Parent gene strand	-
Alternative splicing	Os11g0286500_circ_ag.1 Os11g0286500_circ_ag.2 Os11g0286800_circ_g.1 Os11g0286800_circ_g.2 Os11g0286800_circ_g.3 Os11g0286800_circ_g.4 Os11g0286800_circ_g.5 Os11g0286800_circ_g.6 Os11g0286800_circ_g.7 Os11g0286800_circ_g.8 Os11g0286800_circ_g.9 Os11g0286800_circ_g.10 Os11g0286800_circ_g.11 Os11g0286800_circ_g.13 Os11g0286800_circ_g.14 Os11g0286800_circ_g.15
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os11t0286800-03:5 Os11t0286800-01:6 Os11t0286800-02:6 Os11t0286800-04:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							CACGTCTTAAAGACGTTAATAGAACTTCTTCTGTGACTTCTGAACTGTCTTTAAGATTGCTTAC
TTCATGTTTACTGTAAACTTGGTTCTCTTTTGCAAActtgttaattgggcataaacccacataa
ttgctgttttcatcttcatagtgaatatgatccatgaggttggtcaaagctctttttcttagct
tgttcatt

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 912
Transcript exons: 10362181-10362369,10364108-10364274,10364869-10364953,10
365216-10365410,10365493-10365582,10367291-10367476
CTTGTTAATTGGGCATAAACCCACATAATTGCTGTTTTCATCTTCATAGTGAATATGATCCATG
AGGTTGGTCAAAGCTCTTTTTCTTAGCTTGTTCATTGGCCACATATTAAATAGTGGTTCCATAA
ATTTATGTAAAGAAGCCATAGCAATGTTTTGGAACCACGAAGGAGGATAAATAATGTCGTCCTT
GCAACAAGAAATGCGAGCATTGTTCCAATTGATCTTGTTGTATGGTACATCATAGAGCTCTTCT
CTTAGTGCCAGTATAGTTGGAGTTATTGGCCCAATAAATCTTTTTGCATATATATAAGACATTG
GCATATAAACCATCCGGCAAAAGCACCAAAATCTTCCTGGATGAATGGGAAGAAAATGTGGAAG
CAACCATAGTTCTGGAATAATTGGATTGTTCCCTGACCAATCGTAAACACCAATTACCGAGAGA
TATATCTTTGCCCATTGTGGTGCTACAGTTGCACTGCCATGAGACAGAATCCAGGCACGCCCTT
TTGATAATCCATCATTGTGTTCATCCAGTACCTCCCCTAAGAGCCTTAAGGTAGCATAGTTAAC
ACATGAGCCAAACATGGAGCTTGGGCCTAAAGTATGTGTACTCCAACCCCCATCTTCATTCTGA
ATGTTGTAGATGTAGCGGCATATCTCACGTATATGCTCAGATGATAAGACATCGTTTAGTGACT
TAGTCACATGTAAGGCAAATATCATGAGCGGCAGAATGAACAAAATCCCGCTGTAACCACCAGG
CCAATACCCATCTGGTGCTTGCAAAGAGGAATATTGATCAAGAACACGTCTTAAAGACGTTAAT
AGAACTTCTTCTGTGACTTCTGAACTGTCTTTAAGATTGCTTACTTCATGTTTACTGTAAACTT
GGTTCTCTTTTGCAAA
						
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	CACGTCTTAAAGACGTTAATAGAACTTCTTCTGTGACTTCTGAACTGTCTTTAAGATTGCTTAC TTCATGTTTACTGTAAACTTGGTTCTCTTTTGCAAActtgttaattgggcataaacccacataa ttgctgttttcatcttcatagtgaatatgatccatgaggttggtcaaagctctttttcttagct tgttcatt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 912 Transcript exons: 10362181-10362369,10364108-10364274,10364869-10364953,10 365216-10365410,10365493-10365582,10367291-10367476 CTTGTTAATTGGGCATAAACCCACATAATTGCTGTTTTCATCTTCATAGTGAATATGATCCATG AGGTTGGTCAAAGCTCTTTTTCTTAGCTTGTTCATTGGCCACATATTAAATAGTGGTTCCATAA ATTTATGTAAAGAAGCCATAGCAATGTTTTGGAACCACGAAGGAGGATAAATAATGTCGTCCTT GCAACAAGAAATGCGAGCATTGTTCCAATTGATCTTGTTGTATGGTACATCATAGAGCTCTTCT CTTAGTGCCAGTATAGTTGGAGTTATTGGCCCAATAAATCTTTTTGCATATATATAAGACATTG GCATATAAACCATCCGGCAAAAGCACCAAAATCTTCCTGGATGAATGGGAAGAAAATGTGGAAG CAACCATAGTTCTGGAATAATTGGATTGTTCCCTGACCAATCGTAAACACCAATTACCGAGAGA TATATCTTTGCCCATTGTGGTGCTACAGTTGCACTGCCATGAGACAGAATCCAGGCACGCCCTT TTGATAATCCATCATTGTGTTCATCCAGTACCTCCCCTAAGAGCCTTAAGGTAGCATAGTTAAC ACATGAGCCAAACATGGAGCTTGGGCCTAAAGTATGTGTACTCCAACCCCCATCTTCATTCTGA ATGTTGTAGATGTAGCGGCATATCTCACGTATATGCTCAGATGATAAGACATCGTTTAGTGACT TAGTCACATGTAAGGCAAATATCATGAGCGGCAGAATGAACAAAATCCCGCTGTAACCACCAGG CCAATACCCATCTGGTGCTTGCAAAGAGGAATATTGATCAAGAACACGTCTTAAAGACGTTAAT AGAACTTCTTCTGTGACTTCTGAACTGTCTTTAAGATTGCTTACTTCATGTTTACTGTAAACTT GGTTCTCTTTTGCAAA
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.456579103

Conservation Information
Conserved circRNAs	NA
PMCS	0.456579103

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							10367295-10362183(-)
10362229-10367439(-)
						
						Potential amino acid sequence
						
							MIFALHVTKSLNDVLSSEHIREICRYIYNIQNEDGGWSTHTLGPSSMFGSCVNYATLRLLGEVL
DEHNDGLSKGRAWILSHGSATVAPQWAKIYLSVIGVYDWSGNNPIIPELWLLPHFLPIHPGRFW
CFCRMVYMPMSYIYAKRFIGPITPTILALREELYDVPYNKINWNNARISCCKDDIIYPPSWFQN
IAMASLHKFMEPLFNMWPMNKLRKRALTNLMDHIHYEDENSNYVGLCPINKFAKENQVYSKHEV
SNLKDSSEVTEEVLLTSLRRVLDQYSSLQAPDGYWPGGYSGILFILPLMIFALHVTKSLNDVLS
SEHIREICRYIYNIQNEDGGWSTHTLGPSSMFGSCVNYATLRLLGEVLDEHNDGLSKGRAWILS
HGSATVAPQWAKIYLSVIGVYDWSGNNPIIPELWLLPHFLPIHPGRFWCFCRMVYMPMSYIYAK
RFIGPITPTILALREELYDVPYNKINWNNARISCCKDDIIYPPSWFQNIAMASLHKFMEPLFNM
WPMNKLRKRALTNLMDHIHYEDENSNYVGLCPINKFAKENQVYSKHEVSNLKDSSEVTEEVLLT
SLRRVLDQYSSLQAPDGYWPGGYSGILFILPLMIFALHVTKSLNDVLSSEHIREICRYIYNIQN
EDGGWSTHTLGPSSMFGSCVNYATLRLLGEVLDEHNDGLSKGRAWILSHGSATVAPQWAKIYLS
VIGVYDWSGNNPIIPELWLLPHFLPIHPGRFWCFCRMVYMPMSYIYAKRFIGPITPTILALREE
LYDVPYNKINWNNARISCCKDDIIYPPSWFQNIAMASLHKFMEPLFNMWPMNKLRKRALTNLMD
HIHYEDENSNYVGLCPINKFAKENQVYSKHEVSNLKDSSEVTEEVLLTSLRRVLDQYSSLQAPD
GYWPGGYSGILFILPLMIFALHVTKSLNDVLSSEHIREICRYIYNIQNEDGGWSTHTLGPSSMF
GSCVNYATLRLLGEVLDEHNDGLSKGRAWILSHGSATVAPQWAKIYLSVIGVYDWSGNNPIIPE
LWLLPHFLPIHPGRFWCFCRMVYMPMSYIYAKRFIGPITPTILALREELYDVPYNKINWNNARI
SCCKDDIIYPPSWFQNIAMASLHKFMEPLFNMWPMNKLRKRALTNLMDHIHYEDENSNYVGLCP
INK(-)
MKMKTAIMWVYAQLTSLQKRTKFTVNMK*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	10367295-10362183(-) 10362229-10367439(-)
Potential amino acid sequence	MIFALHVTKSLNDVLSSEHIREICRYIYNIQNEDGGWSTHTLGPSSMFGSCVNYATLRLLGEVL DEHNDGLSKGRAWILSHGSATVAPQWAKIYLSVIGVYDWSGNNPIIPELWLLPHFLPIHPGRFW CFCRMVYMPMSYIYAKRFIGPITPTILALREELYDVPYNKINWNNARISCCKDDIIYPPSWFQN IAMASLHKFMEPLFNMWPMNKLRKRALTNLMDHIHYEDENSNYVGLCPINKFAKENQVYSKHEV SNLKDSSEVTEEVLLTSLRRVLDQYSSLQAPDGYWPGGYSGILFILPLMIFALHVTKSLNDVLS SEHIREICRYIYNIQNEDGGWSTHTLGPSSMFGSCVNYATLRLLGEVLDEHNDGLSKGRAWILS HGSATVAPQWAKIYLSVIGVYDWSGNNPIIPELWLLPHFLPIHPGRFWCFCRMVYMPMSYIYAK RFIGPITPTILALREELYDVPYNKINWNNARISCCKDDIIYPPSWFQNIAMASLHKFMEPLFNM WPMNKLRKRALTNLMDHIHYEDENSNYVGLCPINKFAKENQVYSKHEVSNLKDSSEVTEEVLLT SLRRVLDQYSSLQAPDGYWPGGYSGILFILPLMIFALHVTKSLNDVLSSEHIREICRYIYNIQN EDGGWSTHTLGPSSMFGSCVNYATLRLLGEVLDEHNDGLSKGRAWILSHGSATVAPQWAKIYLS VIGVYDWSGNNPIIPELWLLPHFLPIHPGRFWCFCRMVYMPMSYIYAKRFIGPITPTILALREE LYDVPYNKINWNNARISCCKDDIIYPPSWFQNIAMASLHKFMEPLFNMWPMNKLRKRALTNLMD HIHYEDENSNYVGLCPINKFAKENQVYSKHEVSNLKDSSEVTEEVLLTSLRRVLDQYSSLQAPD GYWPGGYSGILFILPLMIFALHVTKSLNDVLSSEHIREICRYIYNIQNEDGGWSTHTLGPSSMF GSCVNYATLRLLGEVLDEHNDGLSKGRAWILSHGSATVAPQWAKIYLSVIGVYDWSGNNPIIPE LWLLPHFLPIHPGRFWCFCRMVYMPMSYIYAKRFIGPITPTILALREELYDVPYNKINWNNARI SCCKDDIIYPPSWFQNIAMASLHKFMEPLFNMWPMNKLRKRALTNLMDHIHYEDENSNYVGLCP INK(-) MKMKTAIMWVYAQLTSLQKRTKFTVNMK*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os11g0286800_circ_g.12

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