Detail information of Os11g0286800_circ_g.4


General Information
CircRNA Name Os11g0286800_circ_g.4
ID in PlantcircBase osa_circ_009082
Alias Os11circ04410/Os_ciR2656
Organism Oryza sativa
Position chr11: 10355292-10359475  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, SMALT, Segemehl, find_circ
Parent gene Os11g0286800
Parent gene annotation Squalene cyclase domain containing protein. (Os11t0286800-01);Si
milar to Cycloartenol synthase. (Os11t0286800-02);Similar to Cyc
loartenol synthase. (Os11t0286800-03);Similar to Cycloartenol sy
nthase. (Os11t0286800-04)
Parent gene strand -
Alternative splicing Os11g0286500_circ_ag.1 Os11g0286500_circ_ag.2 Os11g0286800_circ_g.1 Os11g0286800_circ_g.2 Os11g0286800_circ_g.3 Os11g0286800_circ_g.5 Os11g0286800_circ_g.6 Os11g0286800_circ_g.7 Os11g0286800_circ_g.8 Os11g0286800_circ_g.9 Os11g0286800_circ_g.10 Os11g0286800_circ_g.11 Os11g0286800_circ_g.12 Os11g0286800_circ_g.13 Os11g0286800_circ_g.14 Os11g0286800_circ_g.15
Support reads 5/5/1
Tissues leaf and panicle/root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0286800-01:7
Os11t0286800-03:6
Os11t0286800-04:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGCTTTCTTGATAGTTTCACTAAATTCTTGGGTAAGGCCGGTTGAGCAGTAGGCCTGAACTAT
AAGGGCAGTATCCCAGCACCGGCTACCAACGTACACctcaacttgacaaccgaggtaatcctct
ccccatccaccagtacttagctgctttgacagcaagaagttgcatgccttcctaatagacaaac
tgttttgg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 768
Transcript exons: 10355292-10355469,10355561-10355704,10355813-10355859,10
357498-10357554,10357782-10357880,10359153-10359272,1035
9353-10359475
CTCAACTTGACAACCGAGGTAATCCTCTCCCCATCCACCAGTACTTAGCTGCTTTGACAGCAAG
AAGTTGCATGCCTTCCTAATAGACAAACTGTTTTGGAATGTTCTTCCTGCCGCAACCAGTCCTT
TTATAGCAAAGAAGGTAGCATAAGTAAAACAGACAGCCCAAGATCCATACCACGATCCATCATT
TTTTTGTTTTTTCTCGATGAACAACACACCATTTTTGATAATTCTATCTATCTCTTCACGGCGG
TATCCAGGATGAACGCCTTTAAACAGTATCAAGGCTTGAATTAGTGATGATGTGCATTCCACGT
ACGGGTAATCCACAATTATGTTCCGGAAACTCTCGGAAGGGTTGATGAACTCCACCCATGGAGT
TGTTCTCTTAGATTCTGCAGAGGACAAAGTGCCATCCTTGTTCACATATGAAAGTAGGCAGTCA
ATAGCATCATACAACCTTTGTTCTTGAATTGGATCTCCTACTTGGGTTGGTGGAATCTTTGATA
ACAACAACACCGCCTTAAGGCATTCGGCAAGAGTATCCGCAATAGGCCATCCATTTTCTCCATT
TGATAATGTCCATGAACCTTTTGACCTTTCACGGTAATATCTTTTGTAATTAGGACAATTCTTG
GTTACCTGCGCATTCTTTATAAAATCATGAGCTTTCTTGATAGTTTCACTAAATTCTTGGGTAA
GGCCGGTTGAGCAGTAGGCCTGAACTATAAGGGCAGTATCCCAGCACCGGCTACCAACGTACAC

Transcript length: 781
Transcript exons: 10355292-10355469,10355561-10355704,10355800-10355859,10
357498-10357554,10357782-10357880,10359153-10359272,1035
9353-10359475
CTCAACTTGACAACCGAGGTAATCCTCTCCCCATCCACCAGTACTTAGCTGCTTTGACAGCAAG
AAGTTGCATGCCTTCCTAATAGACAAACTGTTTTGGAATGTTCTTCCTGCCGCAACCAGTCCTT
TTATAGCAAAGAAGGTAGCATAAGTAAAACAGACAGCCCAAGATCCATACCACGATCCATCATT
TTTTTGTTTTTTCTCGATGAACAACACACCATTTTTGATAATTCTATCTATCTCTTCACGGCGG
TATCCAGGATGAACGCCTTTAAACAGTATCAAGGCTTGAATTAGTGATGATGTGCATTCCACGT
ACATGTCTCGCTTACGGGTAATCCACAATTATGTTCCGGAAACTCTCGGAAGGGTTGATGAACT
CCACCCATGGAGTTGTTCTCTTAGATTCTGCAGAGGACAAAGTGCCATCCTTGTTCACATATGA
AAGTAGGCAGTCAATAGCATCATACAACCTTTGTTCTTGAATTGGATCTCCTACTTGGGTTGGT
GGAATCTTTGATAACAACAACACCGCCTTAAGGCATTCGGCAAGAGTATCCGCAATAGGCCATC
CATTTTCTCCATTTGATAATGTCCATGAACCTTTTGACCTTTCACGGTAATATCTTTTGTAATT
AGGACAATTCTTGGTTACCTGCGCATTCTTTATAAAATCATGAGCTTTCTTGATAGTTTCACTA
AATTCTTGGGTAAGGCCGGTTGAGCAGTAGGCCTGAACTATAAGGGCAGTATCCCAGCACCGGC
TACCAACGTACAC

Genomic sequence CTCAACTTGACAACCGAGGTAATCCTCTCCCCATCCACCAGTACTTAGCTGCTTTGACAGCAAG
AAGTTGCATGCCTTCCTAATAGACAAACTGTTTTGGAATGTTCTTCCTGCCGCAACCAGTCCTT
TTATAGCAAAGAAGGTAGCATAAGTAAAACAGACAGCCCAAGATCCATACCTGTGATTTTAGTT
TGTAATATTAGCTTAAAGATATATAAAGTTTACATAACATGCGAAATTGTACTAAAGTAGGAAT
ACACCATGCATACCACGATCCATCATTTTTTTGTTTTTTCTCGATGAACAACACACCATTTTTG
ATAATTCTATCTATCTCTTCACGGCGGTATCCAGGATGAACGCCTTTAAACAGTATCAAGGCTT
GAATTAGTGATGATGTGCATTCCACGTACCTGCATATTTGTTGCAGGCCTTGAGTTATTTAATT
GATTTCCTTTTGTAAATCATAAGCCGAACATATATAATTCTGATAGTCAAGGATGAACACATGT
CTCGCTTACGGGTAATCCACAATTATGTTCCGGAAACTCTCGGAAGGGTTGATGAACTATATAT
ATGCCAACAATAATAGCTCAAAGTTAGTATCACGCGAAGTAGAAGTTATTTTGACAAGATAACC
AATGAAGAAGAGATGTAATTTGCCCATGATGGGTATTTACCAGGATTCAGATATTCAACGAAAG
CTATGCATTCTCTTAACTGGCCTCCAGTCAAATAAGGGAATGCCATATTTATTTAAGGTCTCAA
TTTGTCGGATACTGAATAAGTGAGTATATTTGAGTGTTAATTAGATTCTTTTTTTAATGACATT
TGTAGCATAGTGGTGTGCATGAAACTCGGAAACAAAATATACTCTTATCATGATGAAATTCTCA
TAAATTTGTTAGCATGTTCAGAACATATGACTTATCGTATTAGTTTGTCTGGTGGATATTCACA
TATTAATCTAAAAAACACAAAGCCCAAAGAATTTTATTATTTTCGAAGATTCTTAAATTTTACT
TGTGAACCTTTTTAGCTGGTGGCATGATGACCTGGCAAGTTATTATTGTCACTCTGGGAACATC
GGAGCTAACATGATCAGTTGTAAAGCACCACCACATCGTCTCCATCTCCAGAGGTACGGTGAAG
GTGATTCCTCCTTCGGATCCGCTGACGAAGGCAGGATTGTACGCAGCAGGATTCGGTGTTGGTG
GAATGGGATTAACCCAATCCTACACCTTGTTTTGATCTCCCAAGGGAAATTCTCCCCCAAATTG
GCAAACAAAGCCTGACCATTAGGCGAGCATTGCATCGCTGGTTGGTAGCCGCTGTGACCAAACT
ACCTGGCCAGATATATTATTTCACTCTTTCGCAATTGTTACTATCGGTAATCCTCAGTTTGGCT
GATTGACTTCCACTATTCCTATTTAATTGGAACCAATTATTTAACATGCATTAAGTCAGATCAT
CTAGAAAAGAAAGGTCGTCGGATCACTTGCATTCTTAGAGCAAGTTTAATAGTATAGTCATGTA
CTAGCTTCAATTCACCTACAGCCAATCTAACAGCTCATTCATACAATAGTTACATACTACACTA
TTAATATCTAGTCCCACCTGTCATACACACACAATGCGTCTTGGAGTCCGTGCTACAGCTGGCT
ACAAATCTATAGCCTGCTGCTCTTCTTTCTCCTTATTTATCTTCTTAAAATATGTTTGTAGCTG
GTTTATAGCCTGCTATTGTACCTGCTCTTAATCTCAACCATTATTGGCTCACTCCTATACTGTA
CAACCATAAATGTATTGTGTAGGATATATAATTGTTCCGTATTAATTATAGCATAACATGCACT
GAGCATTTTATTGTCTTACCTTTCATTCAATTTGGTTTTTAAGTGCTTTTATGTCTAGAAAGAC
ACCAAAAGATTCTAATTTTCTTCGTAAGTGACTTTGTTATGTAGGACTTTACTATTTTTTCAAT
CCTACTTGTCATGAATCTTGACTTTATGTGTGTGCTTGGAGAATTTTAGATTTATACACTTAGA
GCTCTATGTGAGCACACCCACAGTGATTGTCCAGGGTCAACCACAGTCAAAGCATAAGTTTTCT
TCTACATTTAGGTAACTGTGATACAAAAGATTTGCAAGAAGATGACACGCAATTATTTAAATGC
AAAACAATGCTTCCTCAATAATACACTCACCTCCACCCATGGAGTTGTTCTCTTAGATTCTGCA
GAGGACAAAGTGCCATCCTTGTTCTTTGAAAGAATGTACAAAATAGCTGTGTCAGCTAACTTTT
CAAGTTTAAAATAAGTATCATACAACTTATTTAATCATGTATTTGAAGGTGGATTGAGTTTCAC
AATTGGAATAATCAAATTGTGCACTTCACTATTGTAATCTTGTTGTGCTTAATAAGTGAATTTA
AATATTACAAAATACTACAAATAATAGTAATGATATGCTGGAATTCTTATTCTCATACCACATA
TGAAAGTAGGCAGTCAATAGCATCATACAACCTTTGTTCTTGAATTGGATCTCCTACTTGGGTT
GGTGGAATCTTTGATAACAACAACACCGCCTAAAGATATAAATAAATCCCAAAAATACAGATCA
GTATTGTATATCTTTGTTCAGAAATTTACATTGTCATGTAACATCCTAAAAATTTCAGAATTTT
TTTAATGAAAACATTTTAAAGCTATTGTTGTTCATTATTACGAGTTTGGTGTCTTTTCCACTCC
TCCCTTCATATTTCTCTGACCCATTCATATTCTTGACCATTCGCTCGAATTATGTCAAGCCCAC
TGAGACACTCCCAAAATATCGAATGATCACTATTCATATTGGGCCAATCTAATTCTGCCCTATG
GCAGGTTTTCACCAAAATTCCCTCTCTTTCTCCTCTGGTCATCCTTTACTTCCTCTGCTGTGGC
ATTGCCAACAGATGCTCACCTAAGCTGCATCATCATGCTGGTGCTAGCCCTCATCCATTGATTA
ATGAACACCATAACAGAATAGCTGTGCCGCGTCACTACAAGGCATGACGGGATGACTTTGACTT
GGACAGGAATGAGACTAGATTAATTCTCTTCCATTGATTAATGAATAGAGATACAACCTCATCC
TTATAAATATGGCCGTCTTCACCCTTAAGAGAAACACAGGAACTGATCTCTAACATTCAGAAAT
AACTCAAAAACCAACCTAATCTAAACCCGCACTAATCATACAGTAACGAGCATGTTGTGGTCAT
TTGCTCCTCATCCAATACCCCTGATACTATACCCACCCCACAGAACACATGTAGTAGGCCATTT
GTGTTATTCACCAATGGTCCCTCAAGCTAGTTCATGAACTACATTGTGCCATTTGTACCACCTT
CTGCACGCACGTCACACACTACCTTTGGACACGCCAGGCACACATGGTTTAGCATGCCACCTCA
ACAGGTGTCCATGGTAGTGTGCACTTGTGGAACGCAGTTGGCTGCTGGCATATGGGGGAGAGGC
CAATGCATGTGGCCGTGAACGAGCGAATAGCATGGCAAGTTAATCAAGGTGGTAACTATTAGCT
ACTATTCCAAACTAGCCTGTAGCCATGGTAGTCAAGGTGGCAAGGTTTGGACTGTCATGTCTGT
AAGTGAACATAGTTTCAAAAAAAATTCTTTAGAAGATAATGAAAAACAATATAACTGGCATGAG
CCAAAGGGCCTATTCAGCAGCCATGGCTGTGACTTTGGCTGCTCCCGCATGCTGTTTTCTACTG
TATGCGGTACTAGTCCAATTTGCTAGAGCGCAGCCGCAGCCTCGGGCAGCCGAACAGGCCCAAA
GAAAGTAAGAAACTTGAAAACCTTAAGGCATTCGGCAAGAGTATCCGCAATAGGCCATCCATTT
TCTCCATTTGATAATGTCCATGAACCTTTTGACCTTTCACGGTAATATCTTTTGTAATTAGGAC
AATTCTTGGTTACCTTTAACAAAAATAATGATAATGTCAAACTTTAGCAATTACAATCACATGT
ATATGTCTAAAGTATCACATTCAACAAACCTGCGCATTCTTTATAAAATCATGAGCTTTCTTGA
TAGTTTCACTAAATTCTTGGGTAAGGCCGGTTGAGCAGTAGGCCTGAACTATAAGGGCAGTATC
CCAGCACCGGCTACCAACGTACAC
Conservation Information
Conserved circRNAs NA
PMCS 0.421559393
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA