Detail information of 5_circ_ag.9


General Information
CircRNA Name 5_circ_ag.9
ID in PlantcircBase ath_circ_037849
Alias NA
Organism Arabidpsis thaliana
Position chr5: 4095858-4100474  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_ag.2 5_circ_ag.3 5_circ_ag.4 AT5G12950_circ_g.1 5_circ_ag.2 AT5G12950_circ_g.3 AT5G12950_circ_g.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 5_circ_ag.10
Support reads 69
Tissues root, aerial, inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGAAGGAGTCGACTTTGAATCTAAGAATTCCTGTTTGGACTAACTCTATAGGTGCCAAAGTAT
CTTTGAATGGGCGACCCTTAAACGTACCAACTTCAGgtaatttcctatcaatcaaacagaaatg
gaaatctggtgatcaagtaaccatggagctaccaatgagtatcagaaccgaagctataaaaggt
ataaacac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAATTTCCTATCAATCAAACAGAAATGGAAATCTGGTGATCAAGTAACCATGGAGCTACCAAT
GAGTATCAGAACCGAAGCTATAAAAGGTATAAACACACAGTTTTGCTTTTGTAGACTGGTACCC
TTACTCCGGCAATCTATAACTAGCAGTATATGTATAAATTGTATGCAACTCTGTTTTGACATTA
TTTTGTGAGTATTTCAGATGATCGGCCAGAGTACGCATCTCTTCAAGCCATACTCTATGGCCCC
TACTTGTTAGCCGGACACACGAGCAGGGACTGGAGCATCACAACTCAGGCTAAACCTGGAAAAT
GGATAACCCCTATACCTGAAACTCAAAACAGTTACCTTGTCACACTCTCACAACAATCTGGAAA
CGTATCTTACGTGTTTTCAAATAGCAACCAAACCATCACAATGAGAGTATCACCCGAGCCAGGG
ACACAAGATGCCGTTGCAGCGACTTTCAGGCTCGTGACTGATAATTCTAAACCACGGATTTCGG
GTCCAGAAGGACTAATTGGAAGGCTGGTCATGCTTGAGCCGTTTGATTTCCCTGGCATGATTGT
AAAGCAAGCAACTGATAGCTCCCTCACAGTTCAAGCTTCTTCTCCTAGTGACAAAGGAGCTTCT
AGCTTTCGGTTAGTATCTGGACTTGACGGGAAGCTAGGAAGCGTTTCGTTAAGACTAGAGAGCA
AAAAAGGTTGTTTTGTGTACAGCGATCAAACCCTAAAGCAAGGGACAAAACTAAGGCTAGAATG
TGGTTCGGATGCGACTGATGAGAAGTTTAAAGAGGCAGCAAGCTTTAGTTTAAAGACAGGAATG
CATCAATACAATCCAATGAGTTTCGTGATGAGCGGAACACAGAGGAACTTTGTGTTATCGCCAT
TGTTTAGCTTAAGAGATGAAACATACAATGTGTACTTCAGTGTGCAAACTTGAAGAAAGAAACC
CTTATTGGGTGAAAATATAAGAAAGAAAAGTCTCATTTGAAATATAGACATGTGTTTAGATGTT
TAGCCTCTTAGGTTTGTTTGTGATTTTGTGTTCTGCAATGTCATCTAAAAATGTATGTTGCTGT
TACAATAAATATAAACAAATGTGTTTTTATAAATTGTGCTAACGATGAATCCATGTCTTTCTTT
ATATTCTAAATATAGAGTGGAGAATAGTGTGTTGCCTTGAGCTTTCATGAAATAATATTCTCAT
ATGTGATCTGTTGCAGAAATTAGAATACCATAGTTATTGTATCAAAATATCCAACACATGAAAA
GTAAAATATCCAACAAAATCACACGCATAAACATTACTTACGAATACGATAGTTATTGTGTTTA
TGCGTGTGATTTTCACTTTGGTGGAGATAACTTCTATAGAAGAGGGGAGAATATTATACAGTAT
TTTGGAAATATGTTATAATTTTGGAGAAATCACAAATCAAAGTTTATAATTACATTCAGGGAGA
TTTTACAAGATTATAGAAAAACTTTATAAGATTTTGGAAAAACTAATCATAGAAATTATACAAA
ATTCTCTAGTAATCATTTAAAATCTTTGACATATCTACTTTCTATATTTTTTAAAAGTCATTAA
AATTCTTTCAAAATCACAAACCAATAACACCCCCTTAATCTTTTTTTACAACAAATCCTCCTCT
GTTTTTATCCAAATCCTCTCTGTTTTTATCCAAATCCTCCTCTGTTTTTCTCTTTCACTTGATT
GAATTCTTTTTTTAGCAGACATTGCTTCAATCGTTAGAAAATCTATTTTTGGCACACATTTTCT
TTAGAAATCTTTTGCTTTATAAACATCTCTTCTCATTATTTTCTTCTTCCATTTCAAATCCCCT
CTCCCTAACAGTTTTGAGTCTCTTGGATTCTGAACGTGGGATCTGGGGATTTGAATAGTTACAC
TTTTTTGTTTATGAAAAAACATACGATGAAGTCTGGTGTGATCATAACCATTGCTCTGTTATTA
TACACAAGCTTTCTTCTTGTTTGTCTGGCGAAAGAGTGTACAGACATTCCTACGAAGCTCTCAT
CGCATACTCTCCGCAGCGAGCTTCTGCAATCACAGAACGCAAATTTGAAGTCAGAGGAGTTCTC
TCATTACCATTTAACTCCAACTGATGACTCTGCTTGGTCTACTTTGTTGCCAAGGAAGATGTTG
AAAGAAGAGACTGATGATTTTGCTTGGACTATGTTGTATAGAAAGTTCAAGGACTCTAATTCCT
CTGGTAACTTTCTCAAGGATGTCTCTTTGCACGACGTTAGGCTGGACCCGAGCTCTTTCCATTG
GAGGGCTCAGCAGACAAACCTTGAGTATCTATTGATGTTGGATGTTGATGGTTTGGCCTATAAC
TTCCGTAAAGAAGCTGGTCTTAATGCTCCTGGAGTTCCCTATGGAGGATGGGAGAAACCAGATA
GTGAACTCCGTGGCCATTTTGTCGGTATAAACCTCTGCCTTTTTCCCCAATTCAATACACTTTC
TTGATTCATGCTGTTGATAGTATGCAGGAAAAGGTTTTGAGATTTGATGTTTGGTATAGATTGC
ATAGGCCCTTATAGGAATCACCTTTTGACATTTCATAGACACTTGAAAGGATTTTAACTCTTAC
ATTGCATAGAACCTTAAAGGAATGACCTTTTAGTTGATGGCTCAAAAATCTGTCTGTTTGTTTT
GAAGGTCACTATTTGAGTGCAACAGCTTATATGTGGGCAAGTACTCATAACGAAACTCTCAAGG
CGAAAATGACAGCTCTTGTCTCAGCTCTAGCGGAATGCCAGCAGAAATATGGCACAGGATATCT
CTCAGCTTTCCCTTCCAGTTTTTTCGACCGGTTTGAAGCTATAACACATGTTTGGGCTCCTTAC
TATACCATTCACAAGGTGAATAGTCAGACCCTTTGACTGAGTTGAAGATTGATATGCTTATGTT
TTGCAAGAGAGTAACATCTCTGTCTTAATTTTGACAGATTTTGGCCGGCCTGGTGGATCAATAC
AAGTTGGCTGGGAATACTCAAGCTTTAAAGATGGCAACAGGGATGGCTGATTACTTTTATGGCC
GTGTTCAAAATGTGATAAAGAAGTACAGTGTTGAACGACATTGGCTATCACTAAACGAAGAGAC
TGGTGGCATGAATGATGTTCTTTATCAGCTATACAGCATCACTGTGAGTTAAAATCTTATCAGA
CTCTAAACTCCAACCTTAGATTTCTATCTAGCTTTGTGTTATATCATAGTGTTTTGGACTCTGC
AGAGAGATTCCAAGTATTTGTTTCTCGCACATCTCTTTGACAAGCCTTGCTTTCTCGGAGTCCT
CGCAATTCAGGTAATTTACTTGATGATTAGCTTGAAGCCTTGAAGAGATGTGAATGGTAAGGTC
ACATAACTTGACATGTTTGTTTGCAGGCCGATGATATTAGTGGATTCCACGCTAATACACATAT
TCCCATCGTCGTTGGATCCCAACAACGGTATGAAATCACTGGTGATCTACTCCATAAGGTATCG
AAGAGTAACCAAGAAAAGTGTGACATTTTTATCAAAGAAGATATTGGTTCTCTTGATTCTGAAA
TCTGCATTTCCAGGAAATCCCGATGTTCTTTATGGACATAGTTAATGCTTCACACAGCTATGCA
ACTGGAGGAACATCAGTCAAAGAGTTCTGGTACTACCATTACTTGACTTTAGAGTTTGGTTCTT
TGTAACATGACTTTTTGTTTTAAGTCTTAACCATGATTTGGGAATATTTAACATTAGGCAAGAT
CCAAAGAGAATGGCGACTACGTTGCAAACTGAAAACGAGGAATCATGTACTACTTATAACATGC
TCAAGGTAGGATTTCAAACTTCCCCACACCCCCACCCCCCTCTTTTCATTTGCTCAACGTAACA
TATTGACACTTGTACAATTTCAGGTCTCTAGGAATCTGTTCAGATGGACAAAAGAGGTTAGCTA
TGCAGACTATTACGAGCGCGCTTTGACCAACGGTGTGCTCGGAATTCAAAGAGGAACCGATCCC
GGACGGATGATCTACATGCTCCCATTGGGTAAAGGTGTTTCTAAGGCTGTGACTTATCACGGTT
GGGGAACACCTTATGATTCCTTTTGGTGTTGCTATGGCACTGGTAAACTTTTAACCACAATCAT
CTGGTTTTCTACATTTTTCTTGTTTCAAGACAGATTAATTTTGAGGTAATGGTAGTAATTGAAT
CTTTCTGTCCACAGGAATTGAATCCTTCTCAAAACTGGGAGATTCCATATATTTTCAAGAAGAT
GGTGCAACTCCAGCTCTTTATGTCACCCAATATATATCAAGCTCACTTGATTGGAAATCTGCTG
GTCTTTCAATATCTCAGAAAGTTAATCCTGTTGTGTCGTGGGATCCGTACATGCGTGTGACATT
CACTCTTTCTTCTTCCAAAGTGGTAAAACTTTTGCACAACTTGATGCAACATGTTACATTGAAG
AAAGAGTCTGATGGATCCAATTTTGTTGCAGGGAGTGGCGAAGGAGTCGACTTTGAATCTAAGA
ATTCCTGTTTGGACTAACTCTATAGGTGCCAAAGTATCTTTGAATGGGCGACCCTTAAACGTAC
CAACTTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.797216828
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017