Detail information of 5_circ_ag.5


General Information
CircRNA Name 5_circ_ag.5
ID in PlantcircBase ath_circ_037845
Alias 5:4094922-4099702
Organism Arabidpsis thaliana
Position chr5: 4094922-4099702  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ; CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_ag.2 5_circ_ag.3 5_circ_ag.4 AT5G12950_circ_g.1 5_circ_ag.2 AT5G12950_circ_g.3 AT5G12950_circ_g.4 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 5_circ_ag.9 5_circ_ag.10
Support reads 2/3
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATTTGGGAATATTTAACATTAGGCAAGATCCAAAGAGAATGGCGACTACGTTGCAAACTGAA
AACGAGGAATCATGTACTACTTATAACATGCTCAAGatcccaagagaatggcgactgcactgca
aactgaaaacgaggaatcatgtactacttataacatgctcaaggtaggattttaaacttttccc
cctctttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATCCCAAGAGAATGGCGACTGCACTGCAAACTGAAAACGAGGAATCATGTACTACTTATAACAT
GCTCAAGGTAGGATTTTAAACTTTTCCCCCTCTTTCTATTTGCTCAAGGTAACATACTAACATA
TCAACACTTGTACAATTTCAGGTCTCTAGGAATCTGTTCAGATGGACAAAAGAGGTTAGCTATG
CAGACTATTACGAGCGCGCCTTGACCAACGGCGTGTTGGGAATTCAAAGAGGAACCCAGCCTGG
ACTGATGATCTACATGCTCCCATTAGGTAAAGGTGTTTCTAAGGCTGTGACTTATCACGGTTGG
GGAACACCTTATGATTCCTTCTGGTGTTGCTATGGCACTGGTAAACTCTTAACCACAATTCATC
TGGTTTTCTACATTTTTGTAAGATACAAAAGTAAGATAAATTTTGAGGGTCTTTTTTTGTTTCT
GTCCACAGGAATTGAATCCTTCTCAAAACTGGGAGATTCCATATATTTTCAAGAAGATGGTGCA
ACTCCAGCTCTTTATGTCACCCAATATATATCAAGCTCACTTGATTGGAAATCTGCTGGTCTTT
CAATATCTCAGAAAGTTAATCCTGTTGTGTCGTGGGATCCGTACATGCGTGTGACATTCACTCT
TTCTTCTTCCAAAGTGGTAAAACTTTTGCACAACTTGATGCAACATGTTACATTGAAGAAAGAG
TCTGATGGATCCAATTTTGTTGCAGGGAGTGGCGAAGGAGTCGACTTTGAATCTAAGAATTCCT
GTTTGGACTAACTCTATAGGTGCCAAAGTATCTTTGAATGGGCGACCCTTAAACGTACCAACTT
CAGGTGATTTGAGCATTAGGTTCTAAAAAGCAGAACTCGCTTGACTGTTACAGTCTCTAGTTTG
TGAAATGAGAATCATATTGTACCTGTCTTTTTCTTTGCAGGTAATTTCCTATCAATCAAACAGA
AATGGAAATCTGGTGATCAAGTAACCATGGAGCTACCAATGAGTATCAGAACCGAAGCTATAAA
AGGTATAAACACACAGTTTTGCTTTTGTAGACTGGTACCCTTACTCCGGCAATCTATAACTAGC
AGTATATGTATAAATTGTATGCAACTCTGTTTTGACATTATTTTGTGAGTATTTCAGATGATCG
GCCAGAGTACGCATCTCTTCAAGCCATACTCTATGGCCCCTACTTGTTAGCCGGACACACGAGC
AGGGACTGGAGCATCACAACTCAGGCTAAACCTGGAAAATGGATAACCCCTATACCTGAAACTC
AAAACAGTTACCTTGTCACACTCTCACAACAATCTGGAAACGTATCTTACGTGTTTTCAAATAG
CAACCAAACCATCACAATGAGAGTATCACCCGAGCCAGGGACACAAGATGCCGTTGCAGCGACT
TTCAGGCTCGTGACTGATAATTCTAAACCACGGATTTCGGGTCCAGAAGGACTAATTGGAAGGC
TGGTCATGCTTGAGCCGTTTGATTTCCCTGGCATGATTGTAAAGCAAGCAACTGATAGCTCCCT
CACAGTTCAAGCTTCTTCTCCTAGTGACAAAGGAGCTTCTAGCTTTCGGTTAGTATCTGGACTT
GACGGGAAGCTAGGAAGCGTTTCGTTAAGACTAGAGAGCAAAAAAGGTTGTTTTGTGTACAGCG
ATCAAACCCTAAAGCAAGGGACAAAACTAAGGCTAGAATGTGGTTCGGATGCGACTGATGAGAA
GTTTAAAGAGGCAGCAAGCTTTAGTTTAAAGACAGGAATGCATCAATACAATCCAATGAGTTTC
GTGATGAGCGGAACACAGAGGAACTTTGTGTTATCGCCATTGTTTAGCTTAAGAGATGAAACAT
ACAATGTGTACTTCAGTGTGCAAACTTGAAGAAAGAAACCCTTATTGGGTGAAAATATAAGAAA
GAAAAGTCTCATTTGAAATATAGACATGTGTTTAGATGTTTAGCCTCTTAGGTTTGTTTGTGAT
TTTGTGTTCTGCAATGTCATCTAAAAATGTATGTTGCTGTTACAATAAATATAAACAAATGTGT
TTTTATAAATTGTGCTAACGATGAATCCATGTCTTTCTTTATATTCTAAATATAGAGTGGAGAA
TAGTGTGTTGCCTTGAGCTTTCATGAAATAATATTCTCATATGTGATCTGTTGCAGAAATTAGA
ATACCATAGTTATTGTATCAAAATATCCAACACATGAAAAGTAAAATATCCAACAAAATCACAC
GCATAAACATTACTTACGAATACGATAGTTATTGTGTTTATGCGTGTGATTTTCACTTTGGTGG
AGATAACTTCTATAGAAGAGGGGAGAATATTATACAGTATTTTGGAAATATGTTATAATTTTGG
AGAAATCACAAATCAAAGTTTATAATTACATTCAGGGAGATTTTACAAGATTATAGAAAAACTT
TATAAGATTTTGGAAAAACTAATCATAGAAATTATACAAAATTCTCTAGTAATCATTTAAAATC
TTTGACATATCTACTTTCTATATTTTTTAAAAGTCATTAAAATTCTTTCAAAATCACAAACCAA
TAACACCCCCTTAATCTTTTTTTACAACAAATCCTCCTCTGTTTTTATCCAAATCCTCTCTGTT
TTTATCCAAATCCTCCTCTGTTTTTCTCTTTCACTTGATTGAATTCTTTTTTTAGCAGACATTG
CTTCAATCGTTAGAAAATCTATTTTTGGCACACATTTTCTTTAGAAATCTTTTGCTTTATAAAC
ATCTCTTCTCATTATTTTCTTCTTCCATTTCAAATCCCCTCTCCCTAACAGTTTTGAGTCTCTT
GGATTCTGAACGTGGGATCTGGGGATTTGAATAGTTACACTTTTTTGTTTATGAAAAAACATAC
GATGAAGTCTGGTGTGATCATAACCATTGCTCTGTTATTATACACAAGCTTTCTTCTTGTTTGT
CTGGCGAAAGAGTGTACAGACATTCCTACGAAGCTCTCATCGCATACTCTCCGCAGCGAGCTTC
TGCAATCACAGAACGCAAATTTGAAGTCAGAGGAGTTCTCTCATTACCATTTAACTCCAACTGA
TGACTCTGCTTGGTCTACTTTGTTGCCAAGGAAGATGTTGAAAGAAGAGACTGATGATTTTGCT
TGGACTATGTTGTATAGAAAGTTCAAGGACTCTAATTCCTCTGGTAACTTTCTCAAGGATGTCT
CTTTGCACGACGTTAGGCTGGACCCGAGCTCTTTCCATTGGAGGGCTCAGCAGACAAACCTTGA
GTATCTATTGATGTTGGATGTTGATGGTTTGGCCTATAACTTCCGTAAAGAAGCTGGTCTTAAT
GCTCCTGGAGTTCCCTATGGAGGATGGGAGAAACCAGATAGTGAACTCCGTGGCCATTTTGTCG
GTATAAACCTCTGCCTTTTTCCCCAATTCAATACACTTTCTTGATTCATGCTGTTGATAGTATG
CAGGAAAAGGTTTTGAGATTTGATGTTTGGTATAGATTGCATAGGCCCTTATAGGAATCACCTT
TTGACATTTCATAGACACTTGAAAGGATTTTAACTCTTACATTGCATAGAACCTTAAAGGAATG
ACCTTTTAGTTGATGGCTCAAAAATCTGTCTGTTTGTTTTGAAGGTCACTATTTGAGTGCAACA
GCTTATATGTGGGCAAGTACTCATAACGAAACTCTCAAGGCGAAAATGACAGCTCTTGTCTCAG
CTCTAGCGGAATGCCAGCAGAAATATGGCACAGGATATCTCTCAGCTTTCCCTTCCAGTTTTTT
CGACCGGTTTGAAGCTATAACACATGTTTGGGCTCCTTACTATACCATTCACAAGGTGAATAGT
CAGACCCTTTGACTGAGTTGAAGATTGATATGCTTATGTTTTGCAAGAGAGTAACATCTCTGTC
TTAATTTTGACAGATTTTGGCCGGCCTGGTGGATCAATACAAGTTGGCTGGGAATACTCAAGCT
TTAAAGATGGCAACAGGGATGGCTGATTACTTTTATGGCCGTGTTCAAAATGTGATAAAGAAGT
ACAGTGTTGAACGACATTGGCTATCACTAAACGAAGAGACTGGTGGCATGAATGATGTTCTTTA
TCAGCTATACAGCATCACTGTGAGTTAAAATCTTATCAGACTCTAAACTCCAACCTTAGATTTC
TATCTAGCTTTGTGTTATATCATAGTGTTTTGGACTCTGCAGAGAGATTCCAAGTATTTGTTTC
TCGCACATCTCTTTGACAAGCCTTGCTTTCTCGGAGTCCTCGCAATTCAGGTAATTTACTTGAT
GATTAGCTTGAAGCCTTGAAGAGATGTGAATGGTAAGGTCACATAACTTGACATGTTTGTTTGC
AGGCCGATGATATTAGTGGATTCCACGCTAATACACATATTCCCATCGTCGTTGGATCCCAACA
ACGGTATGAAATCACTGGTGATCTACTCCATAAGGTATCGAAGAGTAACCAAGAAAAGTGTGAC
ATTTTTATCAAAGAAGATATTGGTTCTCTTGATTCTGAAATCTGCATTTCCAGGAAATCCCGAT
GTTCTTTATGGACATAGTTAATGCTTCACACAGCTATGCAACTGGAGGAACATCAGTCAAAGAG
TTCTGGTACTACCATTACTTGACTTTAGAGTTTGGTTCTTTGTAACATGACTTTTTGTTTTAAG
TCTTAACCATGATTTGGGAATATTTAACATTAGGCAAGATCCAAAGAGAATGGCGACTACGTTG
CAAACTGAAAACGAGGAATCATGTACTACTTATAACATGCTCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.11421795
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020