Detail information of 5_circ_ag.3


General Information
CircRNA Name 5_circ_ag.3
ID in PlantcircBase ath_circ_037839
Alias NA
Organism Arabidpsis thaliana
Position chr5: 4094415-4099036  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_ag.2 5_circ_ag.4 AT5G12950_circ_g.1 5_circ_ag.2 AT5G12950_circ_g.3 AT5G12950_circ_g.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 5_circ_ag.9 5_circ_ag.10
Support reads 133
Tissues root, leaf, aerial, inflorescences
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAATGTGATAAAGAAGTACAGTGTTGAACGACATTGGCTATCACTAAACGAAGAGACTGGTGGC
ATGAATGATGTTCTTTATCAGCTATACAGCATCACTggagattccaagtatttgctgctcgcac
atctctttgacaagccttgctttctcggagtcctcgcaattcaggtagtttacttgatgattag
cttgaagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAGATTCCAAGTATTTGCTGCTCGCACATCTCTTTGACAAGCCTTGCTTTCTCGGAGTCCTCG
CAATTCAGGTAGTTTACTTGATGATTAGCTTGAAGCCTTGAAGAGATGTGAATGGTAAGGTCAC
ATAACTTGACATGTTTGTTTGCAGGCCGATGATATTAGTGGATTCCACGCTAATACACATATTC
CCATCGTCGTTGGATCCCAACAACGGTATGAAATCACTGGTGATCTACTCCATAAGGTATCGAA
GAGTAACCAAGAAAAGTATGACATTTTTATCAAAGAAGATATTGGTTCTCTTGATTCTGAAATC
TGCATTTCCAGGAAATCTCGATGTTCTTTATGGACATTTTTAATGCTTCTCACAGCTATGCAAC
AGGAGGAACATCAGTCAGTGAGTTCTGGTACTACCATTACCTGACTTTAGTCTTTGGTTCATTG
TAACATGACTTTTTGTTTTAAGTTCTAACCATGATTTGGGAATGGTAATATTAGGCAAGATCCC
AAGAGAATGGCGACTGCACTGCAAACTGAAAACGAGGAATCATGTACTACTTATAACATGCTCA
AGGTAGGATTTTAAACTTTTCCCCCTCTTTCTATTTGCTCAAGGTAACATACTAACATATCAAC
ACTTGTACAATTTCAGGTCTCTAGGAATCTGTTCAGATGGACAAAAGAGGTTAGCTATGCAGAC
TATTACGAGCGCGCCTTGACCAACGGCGTGTTGGGAATTCAAAGAGGAACCCAGCCTGGACTGA
TGATCTACATGCTCCCATTAGGTAAAGGTGTTTCTAAGGCTGTGACTTATCACGGTTGGGGAAC
ACCTTATGATTCCTTCTGGTGTTGCTATGGCACTGGTAAACTCTTAACCACAATTCATCTGGTT
TTCTACATTTTTGTAAGATACAAAAGTAAGATAAATTTTGAGGGTCTTTTTTTGTTTCTGTCCA
CAGGAATTGAATCCTTCTCAAAACTGGGAGATTCCATATATTTTCAAGAAGATGGTGCAACTCC
AGCTCTTTATGTCACCCAATATATATCAAGCTCACTTGATTGGAAATCTGCTGGTCTTTCAATA
TCTCAGAAAGTTAATCCTGTTGTGTCGTGGGATCCGTACATGCGTGTGACATTCACTCTTTCTT
CTTCCAAAGTGGTAAAACTTTTGCACAACTTGATGCAACATGTTACATTGAAGAAAGAGTCTGA
TGGATCCAATTTTGTTGCAGGGAGTGGCGAAGGAGTCGACTTTGAATCTAAGAATTCCTGTTTG
GACTAACTCTATAGGTGCCAAAGTATCTTTGAATGGGCGACCCTTAAACGTACCAACTTCAGGT
GATTTGAGCATTAGGTTCTAAAAAGCAGAACTCGCTTGACTGTTACAGTCTCTAGTTTGTGAAA
TGAGAATCATATTGTACCTGTCTTTTTCTTTGCAGGTAATTTCCTATCAATCAAACAGAAATGG
AAATCTGGTGATCAAGTAACCATGGAGCTACCAATGAGTATCAGAACCGAAGCTATAAAAGGTA
TAAACACACAGTTTTGCTTTTGTAGACTGGTACCCTTACTCCGGCAATCTATAACTAGCAGTAT
ATGTATAAATTGTATGCAACTCTGTTTTGACATTATTTTGTGAGTATTTCAGATGATCGGCCAG
AGTACGCATCTCTTCAAGCCATACTCTATGGCCCCTACTTGTTAGCCGGACACACGAGCAGGGA
CTGGAGCATCACAACTCAGGCTAAACCTGGAAAATGGATAACCCCTATACCTGAAACTCAAAAC
AGTTACCTTGTCACACTCTCACAACAATCTGGAAACGTATCTTACGTGTTTTCAAATAGCAACC
AAACCATCACAATGAGAGTATCACCCGAGCCAGGGACACAAGATGCCGTTGCAGCGACTTTCAG
GCTCGTGACTGATAATTCTAAACCACGGATTTCGGGTCCAGAAGGACTAATTGGAAGGCTGGTC
ATGCTTGAGCCGTTTGATTTCCCTGGCATGATTGTAAAGCAAGCAACTGATAGCTCCCTCACAG
TTCAAGCTTCTTCTCCTAGTGACAAAGGAGCTTCTAGCTTTCGGTTAGTATCTGGACTTGACGG
GAAGCTAGGAAGCGTTTCGTTAAGACTAGAGAGCAAAAAAGGTTGTTTTGTGTACAGCGATCAA
ACCCTAAAGCAAGGGACAAAACTAAGGCTAGAATGTGGTTCGGATGCGACTGATGAGAAGTTTA
AAGAGGCAGCAAGCTTTAGTTTAAAGACAGGAATGCATCAATACAATCCAATGAGTTTCGTGAT
GAGCGGAACACAGAGGAACTTTGTGTTATCGCCATTGTTTAGCTTAAGAGATGAAACATACAAT
GTGTACTTCAGTGTGCAAACTTGAAGAAAGAAACCCTTATTGGGTGAAAATATAAGAAAGAAAA
GTCTCATTTGAAATATAGACATGTGTTTAGATGTTTAGCCTCTTAGGTTTGTTTGTGATTTTGT
GTTCTGCAATGTCATCTAAAAATGTATGTTGCTGTTACAATAAATATAAACAAATGTGTTTTTA
TAAATTGTGCTAACGATGAATCCATGTCTTTCTTTATATTCTAAATATAGAGTGGAGAATAGTG
TGTTGCCTTGAGCTTTCATGAAATAATATTCTCATATGTGATCTGTTGCAGAAATTAGAATACC
ATAGTTATTGTATCAAAATATCCAACACATGAAAAGTAAAATATCCAACAAAATCACACGCATA
AACATTACTTACGAATACGATAGTTATTGTGTTTATGCGTGTGATTTTCACTTTGGTGGAGATA
ACTTCTATAGAAGAGGGGAGAATATTATACAGTATTTTGGAAATATGTTATAATTTTGGAGAAA
TCACAAATCAAAGTTTATAATTACATTCAGGGAGATTTTACAAGATTATAGAAAAACTTTATAA
GATTTTGGAAAAACTAATCATAGAAATTATACAAAATTCTCTAGTAATCATTTAAAATCTTTGA
CATATCTACTTTCTATATTTTTTAAAAGTCATTAAAATTCTTTCAAAATCACAAACCAATAACA
CCCCCTTAATCTTTTTTTACAACAAATCCTCCTCTGTTTTTATCCAAATCCTCTCTGTTTTTAT
CCAAATCCTCCTCTGTTTTTCTCTTTCACTTGATTGAATTCTTTTTTTAGCAGACATTGCTTCA
ATCGTTAGAAAATCTATTTTTGGCACACATTTTCTTTAGAAATCTTTTGCTTTATAAACATCTC
TTCTCATTATTTTCTTCTTCCATTTCAAATCCCCTCTCCCTAACAGTTTTGAGTCTCTTGGATT
CTGAACGTGGGATCTGGGGATTTGAATAGTTACACTTTTTTGTTTATGAAAAAACATACGATGA
AGTCTGGTGTGATCATAACCATTGCTCTGTTATTATACACAAGCTTTCTTCTTGTTTGTCTGGC
GAAAGAGTGTACAGACATTCCTACGAAGCTCTCATCGCATACTCTCCGCAGCGAGCTTCTGCAA
TCACAGAACGCAAATTTGAAGTCAGAGGAGTTCTCTCATTACCATTTAACTCCAACTGATGACT
CTGCTTGGTCTACTTTGTTGCCAAGGAAGATGTTGAAAGAAGAGACTGATGATTTTGCTTGGAC
TATGTTGTATAGAAAGTTCAAGGACTCTAATTCCTCTGGTAACTTTCTCAAGGATGTCTCTTTG
CACGACGTTAGGCTGGACCCGAGCTCTTTCCATTGGAGGGCTCAGCAGACAAACCTTGAGTATC
TATTGATGTTGGATGTTGATGGTTTGGCCTATAACTTCCGTAAAGAAGCTGGTCTTAATGCTCC
TGGAGTTCCCTATGGAGGATGGGAGAAACCAGATAGTGAACTCCGTGGCCATTTTGTCGGTATA
AACCTCTGCCTTTTTCCCCAATTCAATACACTTTCTTGATTCATGCTGTTGATAGTATGCAGGA
AAAGGTTTTGAGATTTGATGTTTGGTATAGATTGCATAGGCCCTTATAGGAATCACCTTTTGAC
ATTTCATAGACACTTGAAAGGATTTTAACTCTTACATTGCATAGAACCTTAAAGGAATGACCTT
TTAGTTGATGGCTCAAAAATCTGTCTGTTTGTTTTGAAGGTCACTATTTGAGTGCAACAGCTTA
TATGTGGGCAAGTACTCATAACGAAACTCTCAAGGCGAAAATGACAGCTCTTGTCTCAGCTCTA
GCGGAATGCCAGCAGAAATATGGCACAGGATATCTCTCAGCTTTCCCTTCCAGTTTTTTCGACC
GGTTTGAAGCTATAACACATGTTTGGGCTCCTTACTATACCATTCACAAGGTGAATAGTCAGAC
CCTTTGACTGAGTTGAAGATTGATATGCTTATGTTTTGCAAGAGAGTAACATCTCTGTCTTAAT
TTTGACAGATTTTGGCCGGCCTGGTGGATCAATACAAGTTGGCTGGGAATACTCAAGCTTTAAA
GATGGCAACAGGGATGGCTGATTACTTTTATGGCCGTGTTCAAAATGTGATAAAGAAGTACAGT
GTTGAACGACATTGGCTATCACTAAACGAAGAGACTGGTGGCATGAATGATGTTCTTTATCAGC
TATACAGCATCACT
Conservation Information
Conserved circRNAs NA
PMCS 0.688888734
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017