Detail information of 5_circ_ag.6


General Information
CircRNA Name 5_circ_ag.6
ID in PlantcircBase ath_circ_037846
Alias NA
Organism Arabidpsis thaliana
Position chr5: 4095071-4099702  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_ag.2 5_circ_ag.3 5_circ_ag.4 AT5G12950_circ_g.1 5_circ_ag.2 AT5G12950_circ_g.3 AT5G12950_circ_g.4 5_circ_ag.5 5_circ_ag.7 5_circ_ag.8 5_circ_ag.9 5_circ_ag.10
Support reads 63
Tissues root, inflorescences, seed, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATTTGGGAATATTTAACATTAGGCAAGATCCAAAGAGAATGGCGACTACGTTGCAAACTGAA
AACGAGGAATCATGTACTACTTATAACATGCTCAAGgtctctaggaatctgttcagatggacaa
aagaggttagctatgcagactattacgagcgcgccttgaccaacggcgtgttgggaattcaaag
aggaaccc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCTCTAGGAATCTGTTCAGATGGACAAAAGAGGTTAGCTATGCAGACTATTACGAGCGCGCCT
TGACCAACGGCGTGTTGGGAATTCAAAGAGGAACCCAGCCTGGACTGATGATCTACATGCTCCC
ATTAGGTAAAGGTGTTTCTAAGGCTGTGACTTATCACGGTTGGGGAACACCTTATGATTCCTTC
TGGTGTTGCTATGGCACTGGTAAACTCTTAACCACAATTCATCTGGTTTTCTACATTTTTGTAA
GATACAAAAGTAAGATAAATTTTGAGGGTCTTTTTTTGTTTCTGTCCACAGGAATTGAATCCTT
CTCAAAACTGGGAGATTCCATATATTTTCAAGAAGATGGTGCAACTCCAGCTCTTTATGTCACC
CAATATATATCAAGCTCACTTGATTGGAAATCTGCTGGTCTTTCAATATCTCAGAAAGTTAATC
CTGTTGTGTCGTGGGATCCGTACATGCGTGTGACATTCACTCTTTCTTCTTCCAAAGTGGTAAA
ACTTTTGCACAACTTGATGCAACATGTTACATTGAAGAAAGAGTCTGATGGATCCAATTTTGTT
GCAGGGAGTGGCGAAGGAGTCGACTTTGAATCTAAGAATTCCTGTTTGGACTAACTCTATAGGT
GCCAAAGTATCTTTGAATGGGCGACCCTTAAACGTACCAACTTCAGGTGATTTGAGCATTAGGT
TCTAAAAAGCAGAACTCGCTTGACTGTTACAGTCTCTAGTTTGTGAAATGAGAATCATATTGTA
CCTGTCTTTTTCTTTGCAGGTAATTTCCTATCAATCAAACAGAAATGGAAATCTGGTGATCAAG
TAACCATGGAGCTACCAATGAGTATCAGAACCGAAGCTATAAAAGGTATAAACACACAGTTTTG
CTTTTGTAGACTGGTACCCTTACTCCGGCAATCTATAACTAGCAGTATATGTATAAATTGTATG
CAACTCTGTTTTGACATTATTTTGTGAGTATTTCAGATGATCGGCCAGAGTACGCATCTCTTCA
AGCCATACTCTATGGCCCCTACTTGTTAGCCGGACACACGAGCAGGGACTGGAGCATCACAACT
CAGGCTAAACCTGGAAAATGGATAACCCCTATACCTGAAACTCAAAACAGTTACCTTGTCACAC
TCTCACAACAATCTGGAAACGTATCTTACGTGTTTTCAAATAGCAACCAAACCATCACAATGAG
AGTATCACCCGAGCCAGGGACACAAGATGCCGTTGCAGCGACTTTCAGGCTCGTGACTGATAAT
TCTAAACCACGGATTTCGGGTCCAGAAGGACTAATTGGAAGGCTGGTCATGCTTGAGCCGTTTG
ATTTCCCTGGCATGATTGTAAAGCAAGCAACTGATAGCTCCCTCACAGTTCAAGCTTCTTCTCC
TAGTGACAAAGGAGCTTCTAGCTTTCGGTTAGTATCTGGACTTGACGGGAAGCTAGGAAGCGTT
TCGTTAAGACTAGAGAGCAAAAAAGGTTGTTTTGTGTACAGCGATCAAACCCTAAAGCAAGGGA
CAAAACTAAGGCTAGAATGTGGTTCGGATGCGACTGATGAGAAGTTTAAAGAGGCAGCAAGCTT
TAGTTTAAAGACAGGAATGCATCAATACAATCCAATGAGTTTCGTGATGAGCGGAACACAGAGG
AACTTTGTGTTATCGCCATTGTTTAGCTTAAGAGATGAAACATACAATGTGTACTTCAGTGTGC
AAACTTGAAGAAAGAAACCCTTATTGGGTGAAAATATAAGAAAGAAAAGTCTCATTTGAAATAT
AGACATGTGTTTAGATGTTTAGCCTCTTAGGTTTGTTTGTGATTTTGTGTTCTGCAATGTCATC
TAAAAATGTATGTTGCTGTTACAATAAATATAAACAAATGTGTTTTTATAAATTGTGCTAACGA
TGAATCCATGTCTTTCTTTATATTCTAAATATAGAGTGGAGAATAGTGTGTTGCCTTGAGCTTT
CATGAAATAATATTCTCATATGTGATCTGTTGCAGAAATTAGAATACCATAGTTATTGTATCAA
AATATCCAACACATGAAAAGTAAAATATCCAACAAAATCACACGCATAAACATTACTTACGAAT
ACGATAGTTATTGTGTTTATGCGTGTGATTTTCACTTTGGTGGAGATAACTTCTATAGAAGAGG
GGAGAATATTATACAGTATTTTGGAAATATGTTATAATTTTGGAGAAATCACAAATCAAAGTTT
ATAATTACATTCAGGGAGATTTTACAAGATTATAGAAAAACTTTATAAGATTTTGGAAAAACTA
ATCATAGAAATTATACAAAATTCTCTAGTAATCATTTAAAATCTTTGACATATCTACTTTCTAT
ATTTTTTAAAAGTCATTAAAATTCTTTCAAAATCACAAACCAATAACACCCCCTTAATCTTTTT
TTACAACAAATCCTCCTCTGTTTTTATCCAAATCCTCTCTGTTTTTATCCAAATCCTCCTCTGT
TTTTCTCTTTCACTTGATTGAATTCTTTTTTTAGCAGACATTGCTTCAATCGTTAGAAAATCTA
TTTTTGGCACACATTTTCTTTAGAAATCTTTTGCTTTATAAACATCTCTTCTCATTATTTTCTT
CTTCCATTTCAAATCCCCTCTCCCTAACAGTTTTGAGTCTCTTGGATTCTGAACGTGGGATCTG
GGGATTTGAATAGTTACACTTTTTTGTTTATGAAAAAACATACGATGAAGTCTGGTGTGATCAT
AACCATTGCTCTGTTATTATACACAAGCTTTCTTCTTGTTTGTCTGGCGAAAGAGTGTACAGAC
ATTCCTACGAAGCTCTCATCGCATACTCTCCGCAGCGAGCTTCTGCAATCACAGAACGCAAATT
TGAAGTCAGAGGAGTTCTCTCATTACCATTTAACTCCAACTGATGACTCTGCTTGGTCTACTTT
GTTGCCAAGGAAGATGTTGAAAGAAGAGACTGATGATTTTGCTTGGACTATGTTGTATAGAAAG
TTCAAGGACTCTAATTCCTCTGGTAACTTTCTCAAGGATGTCTCTTTGCACGACGTTAGGCTGG
ACCCGAGCTCTTTCCATTGGAGGGCTCAGCAGACAAACCTTGAGTATCTATTGATGTTGGATGT
TGATGGTTTGGCCTATAACTTCCGTAAAGAAGCTGGTCTTAATGCTCCTGGAGTTCCCTATGGA
GGATGGGAGAAACCAGATAGTGAACTCCGTGGCCATTTTGTCGGTATAAACCTCTGCCTTTTTC
CCCAATTCAATACACTTTCTTGATTCATGCTGTTGATAGTATGCAGGAAAAGGTTTTGAGATTT
GATGTTTGGTATAGATTGCATAGGCCCTTATAGGAATCACCTTTTGACATTTCATAGACACTTG
AAAGGATTTTAACTCTTACATTGCATAGAACCTTAAAGGAATGACCTTTTAGTTGATGGCTCAA
AAATCTGTCTGTTTGTTTTGAAGGTCACTATTTGAGTGCAACAGCTTATATGTGGGCAAGTACT
CATAACGAAACTCTCAAGGCGAAAATGACAGCTCTTGTCTCAGCTCTAGCGGAATGCCAGCAGA
AATATGGCACAGGATATCTCTCAGCTTTCCCTTCCAGTTTTTTCGACCGGTTTGAAGCTATAAC
ACATGTTTGGGCTCCTTACTATACCATTCACAAGGTGAATAGTCAGACCCTTTGACTGAGTTGA
AGATTGATATGCTTATGTTTTGCAAGAGAGTAACATCTCTGTCTTAATTTTGACAGATTTTGGC
CGGCCTGGTGGATCAATACAAGTTGGCTGGGAATACTCAAGCTTTAAAGATGGCAACAGGGATG
GCTGATTACTTTTATGGCCGTGTTCAAAATGTGATAAAGAAGTACAGTGTTGAACGACATTGGC
TATCACTAAACGAAGAGACTGGTGGCATGAATGATGTTCTTTATCAGCTATACAGCATCACTGT
GAGTTAAAATCTTATCAGACTCTAAACTCCAACCTTAGATTTCTATCTAGCTTTGTGTTATATC
ATAGTGTTTTGGACTCTGCAGAGAGATTCCAAGTATTTGTTTCTCGCACATCTCTTTGACAAGC
CTTGCTTTCTCGGAGTCCTCGCAATTCAGGTAATTTACTTGATGATTAGCTTGAAGCCTTGAAG
AGATGTGAATGGTAAGGTCACATAACTTGACATGTTTGTTTGCAGGCCGATGATATTAGTGGAT
TCCACGCTAATACACATATTCCCATCGTCGTTGGATCCCAACAACGGTATGAAATCACTGGTGA
TCTACTCCATAAGGTATCGAAGAGTAACCAAGAAAAGTGTGACATTTTTATCAAAGAAGATATT
GGTTCTCTTGATTCTGAAATCTGCATTTCCAGGAAATCCCGATGTTCTTTATGGACATAGTTAA
TGCTTCACACAGCTATGCAACTGGAGGAACATCAGTCAAAGAGTTCTGGTACTACCATTACTTG
ACTTTAGAGTTTGGTTCTTTGTAACATGACTTTTTGTTTTAAGTCTTAACCATGATTTGGGAAT
ATTTAACATTAGGCAAGATCCAAAGAGAATGGCGACTACGTTGCAAACTGAAAACGAGGAATCA
TGTACTACTTATAACATGCTCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.800737099
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017