Detail information of Os02g0782200_circ_g.7


General Information
CircRNA Name Os02g0782200_circ_g.7
ID in PlantcircBase osa_circ_016815
Alias NA
Organism Oryza sativa
Position chr2: 33165095-33168048  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os02g0782200
Parent gene annotation Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os02t07822
00-01);NOT2/NOT3/NOT5 domain containing protein. (Os02t0782200-0
2);Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os02t07
82200-03)
Parent gene strand -
Alternative splicing Os02g0782200_circ_g.2 Os02g0782200_circ_g.3 Os02g0782200_circ_g.4 Os02g0782200_circ_g.5 Os02g0782200_circ_g.6 Os02g0782200_circ_g.8 Os02g0782200_circ_g.9 Os02g0782200_circ_g.10
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0782200-01:6
Os02t0782200-03:3
Os02t0782200-02:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATCAGTTGTAAGGATAAGCACGCACATTCAGCAGGCCCGACATTGTGACAGCAACAAAAGCAA
GTCAATATTCAACAGTAAGCAGCTATTCCTTCCAATctttgtatccaggtaaagccgggaagtc
ttcattttgaatgctgaattcctggttttgctgaacaatggtgttaacaccaactccttgcttc
cgtaggga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTGTATCCAGGTAAAGCCGGGAAGTCTTCATTTTGAATGCTGAATTCCTGGTTTTGCTGAAC
AATGGTGTTAACACCAACTCCTTGCTTCCGTAGGGAGCCTGTTATTTAAAGAAATTGTCAAGGC
ATCCTCCCAATTAATGAAAAATATATATGAATCATTACCATATTGTCCTTGTGGACCACCCGCA
GAACTAGGTCGACCAGTCAGCTGGGGAAAATCACTCATGTCAAATGGAGCACCGTCACTGGCAT
CATGCAGCATCCCCATAGAACCAAGGGAATTATTTCCTCCTTGTATTTGGTTCTGAGATAAAGA
ACCTCCAGATGTTGGATATAAACTCCCCATCATGTTCAGCATTTGAGGTGATCCTGATATCAGA
AATTTAAAAAAAAGAAGAAGAAGCTGAATGAAAAGACTCACGGGCTTTCACCTCAATAGATATA
AGCTAATACATGATATACCTCTTGTTAAACAGTAAAATATTATAGATACATGACATCACAAACA
TATAAAATATAATGTTTCTAAGTATTTACTCAGCATCATATTACTTACATAAATCATATTGTGA
TGCCAAAAAAAATAACAGTTATAAAAATAAGCAATAGATATTCTAGCATCCGATGCATGCATGC
CAGGAGGAGGAATACCAATATTTCCTCTAACTCTGACACCTATCAAATGATAGTACTGTTGGAA
TTTTCATTTCTAATCTTAATCCTATCAAATGCAACCGACTGGTGTTCTTTTAGGACGCAGCGCG
ACAGCAGATGCTAAGATTGACCAGGTTATAACTTTGGACGTTACAATTACATTACAAATGTGGT
AAGGAAACATGAAAGAGATTGTAAAACATAAGCTGGACTGTGTTGGATAAACAGTGAAGGCACC
AATTACTTTCAGCAGATAGGTTGTGGTTGGAGCTTTTCTTCAGGTATGACTGATTTAGGTGGGA
AGCTTGTTAAGGTCCTAGGATTTTTCTTGTTTCTGATCATGATCCCACTTACCAAAACTTTTTT
GTTTGCTCACTAACAGCACAAGGATCCTACTTTTAGAGGATAACAACCAGCAGCTACTTAGCAA
TATTATTAACAAATCCTTCAATACATATCATTTGGGTATTTTTGACACTTGTTTCATATGCCCA
ACTTTGATGTCAAGAAAGAGAGGGGTAACTCTGCAGCTAAAAGCAAATTATTCAGTAGATATAC
TCAACAAAAAAATCAGCATAGCCACGGTAGAGCATGTGTTAACAAACAATAGCTGATGTTACAA
ATAACTACAATAGAAAAGCAGCTAAGCAGCCATGAAGGCATGACAACATAAAGAGTATTCGACT
CTATGGAGTAACAAACTATTTATACAGTCTGTTCCATAATTTACCTTGCTGAAGAATGCCATTC
ATCATCCTGCTGGATCCTTGGACATTCAGACCGCCACTGCCAACATTGCCACTCAAATTCATGC
GTGATGCTATGCTTGGCACAGATAATCCACCAGAGCTTATATTCCTTCCAATGTTACTTCCACC
CACAATATTTCCTACAGAACCAGTGATCCTAGGACCCAAATTTCCCAAAGATGGAGATACTGAC
ATCCCAGGAACAGAATTACGACTACCACCAGCACCCAGGTTTGAGGATAAGCCTTGAATGGTAC
CACCAATATTCAGGCTACTACTAAATGCTGGACCTCCACCAACATTCAATCCTCTACTACCGAC
TCCTGAATGACCATGAGGGATCTGCAACAAAACAGTAACATGGTGAGGTTACACGATCATTTCA
ACCAGCAACAATGTACCTTAGTTTCCACAAGCCGTCAGCATAAACAATAAAATTGCAATATGGA
TGAAGGAAGTCATTACAACCTGGGACATGCCAACTGGAAGGTTGTTTGAAGCAAATCTCCCAGG
CATGCTCCCTCCAGGCTGTTGAACCCCAGAGGATGGAAGGCCACTCATGGCAGCATTCCTCTGA
GAAAACGATCCAGGCATATTTGGCATATTTAAACTTCCATGCATGTTGTGCAAACCTTGAAAAA
TGGCAAGAAGATTTACTACATGAATGTAGCATTGTGCGAACAAACTAACCAAGCTATTTTACTA
TATGCTCACCAGAGTGATGGAAACCCCCTGGAACTGATCCAGATTGACCAGAAAAGGACCCTGT
AAACGGTCTTCCAGTTGAGTCTTGAAGATTTGATGCAGAATTGTTCAGGTTTGACTGCTAGGAA
AAAATGGCAAGTTGTCAAAACAAAGAACAAAGCAGGTCATATGGAATTGCCATTATCTTCAAAA
GCAAATACCATGTTGGGTTAAGCAGCAGCATAAAAGAATAAATAGTGCCCAACCAAACAGATTA
TCCACCACAGATATATTAGCTCTGTCCCATAATATAAGGGATTGTGGCTACGCATTTGCATAGA
CAAAAGCCCCTTATATTATGGGACGGAGGGAGTAGCTGATAATGCAGTGCCTGTACATGCATAG
CTTATTTAGGCAATCAATGCTAATATTCCCTGCCATCACAGTTCTCATATGGAAGTGTCAGGCT
TCAAATTTCATATGAAGCATCTCAACACAGAAAACTCACGTAAGGATGGCAAAGAATGGAAGAG
GACAGTGCCGCAGTTGTAAGAAATAAATGTGTGTATAAAATATAAATAAATCAACACTATGTTA
TAACAGAGGACAATTATCACTTTATCAGGTGATAAAAGACAAATCTATTGCTCGTTATCCACGC
GAAGCTGCAGCATAAGCAAACTATTTGATGAACAAACTAGTCAGAGAGAAATCAAGTAAAAAGT
TTGAAATGGAAAATAGGGATATCAAGCGAAAGCACAATAATCAGTTGTAAGGATAAGCACGCAC
ATTCAGCAGGCCCGACATTGTGACAGCAACAAAAGCAAGTCAATATTCAACAGTAAGCAGCTAT
TCCTTCCAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.120483424
Functional Information
Coding potential Y
Potential coding position 33165265-33167979(-)
33167994-33168037(-)
Potential amino acid sequence MAPYGSKELVLTPLFSKTRNSAFKMKTSRLYLDTKIGRNSCLLLNIDLLLLLSQCRAC*(-)
MSGLLNSNLNNSASNLQDSTGRPFTGSFSGQSGSVPGGFHHSGLHNMHGSLNMPNMPGSFSQRN
AAMSGLPSSGVQQPGGSMPGRFASNNLPVGMSQIPHGHSGVGSRGLNVGGGPAFSSSLNIGGTI
QGLSSNLGAGGSRNSVPGMSVSPSLGNLGPRITGSVGNIVGGSNIGRNISSGGLSVPSIASRMN
LSGNVGSGGLNVQGSSRMMNGILQQGSPQMLNMMGSLYPTSGGSLSQNQIQGGNNSLGSMGMLH
DASDGAPFDMSDFPQLTGRPSSAGGPQGQYGSLRKQGVGVNTIVQQNQEFSIQNEDFPALPGYK
DWKE*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017